Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01358

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01357 and OHPLBJKB_01358 are separated by 95 nucleotidesOHPLBJKB_01358 and OHPLBJKB_01359 are separated by 75 nucleotides OHPLBJKB_01357: OHPLBJKB_01357 - HTH-type transcriptional regulator DsdC, at 1,401,592 to 1,402,527 _01357 OHPLBJKB_01358: OHPLBJKB_01358 - tRNA-Arg, at 1,402,623 to 1,402,697 _01358 OHPLBJKB_01359: OHPLBJKB_01359 - Inner membrane protein YfdC, at 1,402,773 to 1,403,705 _01359 Position (kb) 1402 1403Strain fitness (log2 ratio) -2 -1 0 1at 1401.654 kb on + strandat 1401.729 kb on - strand, within OHPLBJKB_01357at 1401.739 kb on - strand, within OHPLBJKB_01357at 1401.804 kb on - strand, within OHPLBJKB_01357at 1401.804 kb on - strand, within OHPLBJKB_01357at 1401.826 kb on + strand, within OHPLBJKB_01357at 1401.905 kb on + strand, within OHPLBJKB_01357at 1401.906 kb on - strand, within OHPLBJKB_01357at 1401.928 kb on - strand, within OHPLBJKB_01357at 1401.956 kb on + strand, within OHPLBJKB_01357at 1401.966 kb on + strand, within OHPLBJKB_01357at 1401.984 kb on + strand, within OHPLBJKB_01357at 1401.985 kb on - strand, within OHPLBJKB_01357at 1402.054 kb on + strand, within OHPLBJKB_01357at 1402.054 kb on + strand, within OHPLBJKB_01357at 1402.055 kb on - strand, within OHPLBJKB_01357at 1402.055 kb on - strand, within OHPLBJKB_01357at 1402.122 kb on - strand, within OHPLBJKB_01357at 1402.122 kb on - strand, within OHPLBJKB_01357at 1402.122 kb on - strand, within OHPLBJKB_01357at 1402.126 kb on - strand, within OHPLBJKB_01357at 1402.126 kb on - strand, within OHPLBJKB_01357at 1402.135 kb on + strand, within OHPLBJKB_01357at 1402.166 kb on + strand, within OHPLBJKB_01357at 1402.185 kb on + strand, within OHPLBJKB_01357at 1402.186 kb on - strand, within OHPLBJKB_01357at 1402.186 kb on - strand, within OHPLBJKB_01357at 1402.243 kb on - strand, within OHPLBJKB_01357at 1402.243 kb on - strand, within OHPLBJKB_01357at 1402.243 kb on - strand, within OHPLBJKB_01357at 1402.266 kb on + strand, within OHPLBJKB_01357at 1402.318 kb on - strand, within OHPLBJKB_01357at 1402.439 kb on - strandat 1402.441 kb on + strandat 1402.441 kb on + strandat 1402.441 kb on + strandat 1402.442 kb on - strandat 1402.442 kb on - strandat 1402.442 kb on - strandat 1402.442 kb on - strandat 1402.442 kb on - strandat 1402.442 kb on - strandat 1402.491 kb on + strandat 1402.525 kb on + strandat 1402.526 kb on - strandat 1402.532 kb on + strandat 1402.533 kb on - strandat 1402.570 kb on + strandat 1402.571 kb on - strandat 1402.571 kb on - strandat 1402.595 kb on + strandat 1402.596 kb on - strandat 1402.605 kb on + strandat 1402.676 kb on - strand, within OHPLBJKB_01358at 1402.676 kb on - strand, within OHPLBJKB_01358at 1402.685 kb on + strand, within OHPLBJKB_01358at 1402.685 kb on + strand, within OHPLBJKB_01358at 1402.689 kb on + strand, within OHPLBJKB_01358at 1402.690 kb on - strandat 1402.711 kb on + strandat 1402.714 kb on - strandat 1402.740 kb on - strandat 1402.740 kb on - strandat 1402.740 kb on - strandat 1402.774 kb on + strandat 1402.848 kb on - strandat 1402.863 kb on - strandat 1402.896 kb on - strand, within OHPLBJKB_01359at 1402.928 kb on + strand, within OHPLBJKB_01359at 1402.928 kb on + strand, within OHPLBJKB_01359at 1402.928 kb on + strand, within OHPLBJKB_01359at 1402.929 kb on - strand, within OHPLBJKB_01359at 1402.929 kb on - strand, within OHPLBJKB_01359at 1403.055 kb on + strand, within OHPLBJKB_01359at 1403.056 kb on - strand, within OHPLBJKB_01359at 1403.056 kb on - strand, within OHPLBJKB_01359at 1403.057 kb on + strand, within OHPLBJKB_01359at 1403.057 kb on + strand, within OHPLBJKB_01359at 1403.057 kb on + strand, within OHPLBJKB_01359at 1403.057 kb on + strand, within OHPLBJKB_01359at 1403.058 kb on - strand, within OHPLBJKB_01359at 1403.106 kb on - strand, within OHPLBJKB_01359at 1403.220 kb on - strand, within OHPLBJKB_01359at 1403.220 kb on - strand, within OHPLBJKB_01359at 1403.225 kb on + strand, within OHPLBJKB_01359at 1403.225 kb on + strand, within OHPLBJKB_01359at 1403.225 kb on + strand, within OHPLBJKB_01359at 1403.225 kb on + strand, within OHPLBJKB_01359at 1403.225 kb on + strand, within OHPLBJKB_01359at 1403.225 kb on + strand, within OHPLBJKB_01359at 1403.225 kb on + strand, within OHPLBJKB_01359at 1403.226 kb on - strand, within OHPLBJKB_01359at 1403.226 kb on - strand, within OHPLBJKB_01359at 1403.226 kb on - strand, within OHPLBJKB_01359at 1403.226 kb on - strand, within OHPLBJKB_01359at 1403.226 kb on - strand, within OHPLBJKB_01359at 1403.226 kb on - strand, within OHPLBJKB_01359at 1403.226 kb on - strand, within OHPLBJKB_01359at 1403.226 kb on - strand, within OHPLBJKB_01359at 1403.227 kb on + strand, within OHPLBJKB_01359at 1403.227 kb on + strand, within OHPLBJKB_01359at 1403.227 kb on + strand, within OHPLBJKB_01359at 1403.228 kb on - strand, within OHPLBJKB_01359at 1403.228 kb on - strand, within OHPLBJKB_01359at 1403.228 kb on - strand, within OHPLBJKB_01359at 1403.228 kb on - strand, within OHPLBJKB_01359at 1403.228 kb on - strand, within OHPLBJKB_01359at 1403.228 kb on - strand, within OHPLBJKB_01359at 1403.249 kb on + strand, within OHPLBJKB_01359at 1403.249 kb on + strand, within OHPLBJKB_01359at 1403.264 kb on + strand, within OHPLBJKB_01359at 1403.264 kb on + strand, within OHPLBJKB_01359at 1403.295 kb on + strand, within OHPLBJKB_01359at 1403.295 kb on + strand, within OHPLBJKB_01359at 1403.296 kb on - strand, within OHPLBJKB_01359at 1403.296 kb on - strand, within OHPLBJKB_01359at 1403.296 kb on - strand, within OHPLBJKB_01359at 1403.296 kb on - strand, within OHPLBJKB_01359at 1403.296 kb on - strand, within OHPLBJKB_01359at 1403.297 kb on + strand, within OHPLBJKB_01359at 1403.297 kb on + strand, within OHPLBJKB_01359at 1403.297 kb on + strand, within OHPLBJKB_01359at 1403.297 kb on + strand, within OHPLBJKB_01359at 1403.298 kb on - strand, within OHPLBJKB_01359at 1403.298 kb on - strand, within OHPLBJKB_01359at 1403.298 kb on - strand, within OHPLBJKB_01359at 1403.301 kb on + strand, within OHPLBJKB_01359at 1403.301 kb on + strand, within OHPLBJKB_01359at 1403.301 kb on + strand, within OHPLBJKB_01359at 1403.301 kb on + strand, within OHPLBJKB_01359at 1403.370 kb on + strand, within OHPLBJKB_01359at 1403.399 kb on + strand, within OHPLBJKB_01359at 1403.399 kb on + strand, within OHPLBJKB_01359at 1403.400 kb on - strand, within OHPLBJKB_01359at 1403.411 kb on + strand, within OHPLBJKB_01359at 1403.411 kb on + strand, within OHPLBJKB_01359at 1403.411 kb on + strand, within OHPLBJKB_01359at 1403.411 kb on + strand, within OHPLBJKB_01359at 1403.412 kb on - strand, within OHPLBJKB_01359at 1403.412 kb on - strand, within OHPLBJKB_01359at 1403.412 kb on - strand, within OHPLBJKB_01359at 1403.622 kb on + strandat 1403.622 kb on + strandat 1403.622 kb on + strandat 1403.623 kb on - strandat 1403.623 kb on - strandat 1403.623 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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1,401,654 + +1.1
1,401,729 - OHPLBJKB_01357 0.15 +0.4
1,401,739 - OHPLBJKB_01357 0.16 -0.3
1,401,804 - OHPLBJKB_01357 0.23 -0.2
1,401,804 - OHPLBJKB_01357 0.23 +0.3
1,401,826 + OHPLBJKB_01357 0.25 +1.3
1,401,905 + OHPLBJKB_01357 0.33 -1.1
1,401,906 - OHPLBJKB_01357 0.34 +0.9
1,401,928 - OHPLBJKB_01357 0.36 +0.4
1,401,956 + OHPLBJKB_01357 0.39 +0.0
1,401,966 + OHPLBJKB_01357 0.40 -0.2
1,401,984 + OHPLBJKB_01357 0.42 -1.3
1,401,985 - OHPLBJKB_01357 0.42 -0.5
1,402,054 + OHPLBJKB_01357 0.49 +0.2
1,402,054 + OHPLBJKB_01357 0.49 +1.3
1,402,055 - OHPLBJKB_01357 0.49 +0.8
1,402,055 - OHPLBJKB_01357 0.49 -1.4
1,402,122 - OHPLBJKB_01357 0.57 +1.0
1,402,122 - OHPLBJKB_01357 0.57 +0.3
1,402,122 - OHPLBJKB_01357 0.57 -0.8
1,402,126 - OHPLBJKB_01357 0.57 -0.7
1,402,126 - OHPLBJKB_01357 0.57 +0.6
1,402,135 + OHPLBJKB_01357 0.58 -1.2
1,402,166 + OHPLBJKB_01357 0.61 -0.2
1,402,185 + OHPLBJKB_01357 0.63 -0.7
1,402,186 - OHPLBJKB_01357 0.63 -0.8
1,402,186 - OHPLBJKB_01357 0.63 +0.2
1,402,243 - OHPLBJKB_01357 0.70 -1.1
1,402,243 - OHPLBJKB_01357 0.70 -1.1
1,402,243 - OHPLBJKB_01357 0.70 -0.3
1,402,266 + OHPLBJKB_01357 0.72 -0.3
1,402,318 - OHPLBJKB_01357 0.78 -0.3
1,402,439 - -0.0
1,402,441 + -0.1
1,402,441 + +0.5
1,402,441 + +0.2
1,402,442 - +0.2
1,402,442 - +0.5
1,402,442 - -0.3
1,402,442 - -1.1
1,402,442 - -1.1
1,402,442 - -0.2
1,402,491 + -0.2
1,402,525 + -0.9
1,402,526 - -1.3
1,402,532 + -0.3
1,402,533 - -0.2
1,402,570 + -0.5
1,402,571 - -0.4
1,402,571 - -0.5
1,402,595 + +0.1
1,402,596 - +0.0
1,402,605 + +0.9
1,402,676 - OHPLBJKB_01358 0.71 -0.7
1,402,676 - OHPLBJKB_01358 0.71 -0.7
1,402,685 + OHPLBJKB_01358 0.83 -0.8
1,402,685 + OHPLBJKB_01358 0.83 -0.3
1,402,689 + OHPLBJKB_01358 0.88 -1.1
1,402,690 - -1.4
1,402,711 + -0.6
1,402,714 - -1.5
1,402,740 - -0.4
1,402,740 - +0.1
1,402,740 - -0.2
1,402,774 + -0.7
1,402,848 - +1.0
1,402,863 - -0.3
1,402,896 - OHPLBJKB_01359 0.13 +0.0
1,402,928 + OHPLBJKB_01359 0.17 -0.8
1,402,928 + OHPLBJKB_01359 0.17 -0.5
1,402,928 + OHPLBJKB_01359 0.17 +0.5
1,402,929 - OHPLBJKB_01359 0.17 +0.2
1,402,929 - OHPLBJKB_01359 0.17 -1.3
1,403,055 + OHPLBJKB_01359 0.30 +0.0
1,403,056 - OHPLBJKB_01359 0.30 +0.9
1,403,056 - OHPLBJKB_01359 0.30 -0.6
1,403,057 + OHPLBJKB_01359 0.30 -0.2
1,403,057 + OHPLBJKB_01359 0.30 +0.3
1,403,057 + OHPLBJKB_01359 0.30 -1.2
1,403,057 + OHPLBJKB_01359 0.30 -0.2
1,403,058 - OHPLBJKB_01359 0.31 -0.3
1,403,106 - OHPLBJKB_01359 0.36 -0.8
1,403,220 - OHPLBJKB_01359 0.48 +1.1
1,403,220 - OHPLBJKB_01359 0.48 -0.7
1,403,225 + OHPLBJKB_01359 0.48 -0.4
1,403,225 + OHPLBJKB_01359 0.48 +0.3
1,403,225 + OHPLBJKB_01359 0.48 -1.2
1,403,225 + OHPLBJKB_01359 0.48 +0.6
1,403,225 + OHPLBJKB_01359 0.48 -0.8
1,403,225 + OHPLBJKB_01359 0.48 +0.6
1,403,225 + OHPLBJKB_01359 0.48 +0.3
1,403,226 - OHPLBJKB_01359 0.49 +0.1
1,403,226 - OHPLBJKB_01359 0.49 -0.1
1,403,226 - OHPLBJKB_01359 0.49 -0.3
1,403,226 - OHPLBJKB_01359 0.49 -0.4
1,403,226 - OHPLBJKB_01359 0.49 +0.5
1,403,226 - OHPLBJKB_01359 0.49 +0.1
1,403,226 - OHPLBJKB_01359 0.49 -0.5
1,403,226 - OHPLBJKB_01359 0.49 -0.6
1,403,227 + OHPLBJKB_01359 0.49 +0.4
1,403,227 + OHPLBJKB_01359 0.49 -0.3
1,403,227 + OHPLBJKB_01359 0.49 +0.9
1,403,228 - OHPLBJKB_01359 0.49 +0.7
1,403,228 - OHPLBJKB_01359 0.49 -0.4
1,403,228 - OHPLBJKB_01359 0.49 -0.4
1,403,228 - OHPLBJKB_01359 0.49 +0.0
1,403,228 - OHPLBJKB_01359 0.49 +1.3
1,403,228 - OHPLBJKB_01359 0.49 -0.2
1,403,249 + OHPLBJKB_01359 0.51 +0.3
1,403,249 + OHPLBJKB_01359 0.51 -0.7
1,403,264 + OHPLBJKB_01359 0.53 +0.0
1,403,264 + OHPLBJKB_01359 0.53 -0.5
1,403,295 + OHPLBJKB_01359 0.56 -0.7
1,403,295 + OHPLBJKB_01359 0.56 +0.3
1,403,296 - OHPLBJKB_01359 0.56 +0.2
1,403,296 - OHPLBJKB_01359 0.56 -1.1
1,403,296 - OHPLBJKB_01359 0.56 +0.8
1,403,296 - OHPLBJKB_01359 0.56 +0.7
1,403,296 - OHPLBJKB_01359 0.56 +0.1
1,403,297 + OHPLBJKB_01359 0.56 -0.2
1,403,297 + OHPLBJKB_01359 0.56 -0.1
1,403,297 + OHPLBJKB_01359 0.56 -0.3
1,403,297 + OHPLBJKB_01359 0.56 +1.3
1,403,298 - OHPLBJKB_01359 0.56 +0.9
1,403,298 - OHPLBJKB_01359 0.56 -0.3
1,403,298 - OHPLBJKB_01359 0.56 +0.5
1,403,301 + OHPLBJKB_01359 0.57 -0.3
1,403,301 + OHPLBJKB_01359 0.57 -0.5
1,403,301 + OHPLBJKB_01359 0.57 +0.1
1,403,301 + OHPLBJKB_01359 0.57 -0.2
1,403,370 + OHPLBJKB_01359 0.64 -2.4
1,403,399 + OHPLBJKB_01359 0.67 +0.5
1,403,399 + OHPLBJKB_01359 0.67 -1.1
1,403,400 - OHPLBJKB_01359 0.67 -1.2
1,403,411 + OHPLBJKB_01359 0.68 +0.6
1,403,411 + OHPLBJKB_01359 0.68 +0.3
1,403,411 + OHPLBJKB_01359 0.68 -0.1
1,403,411 + OHPLBJKB_01359 0.68 +0.8
1,403,412 - OHPLBJKB_01359 0.68 -0.5
1,403,412 - OHPLBJKB_01359 0.68 -0.8
1,403,412 - OHPLBJKB_01359 0.68 -0.1
1,403,622 + +0.1
1,403,622 + -0.5
1,403,622 + +0.0
1,403,623 - -0.4
1,403,623 - -0.3
1,403,623 - -1.9

Or see this region's nucleotide sequence