Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01354

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01353 and OHPLBJKB_01354 overlap by 1 nucleotidesOHPLBJKB_01354 and OHPLBJKB_01355 are separated by 107 nucleotides OHPLBJKB_01353: OHPLBJKB_01353 - putative multidrug resistance protein EmrK, at 1,395,882 to 1,397,045 _01353 OHPLBJKB_01354: OHPLBJKB_01354 - putative multidrug resistance protein EmrY, at 1,397,045 to 1,398,583 _01354 OHPLBJKB_01355: OHPLBJKB_01355 - D-serine dehydratase, at 1,398,691 to 1,400,019 _01355 Position (kb) 1397 1398 1399Strain fitness (log2 ratio) -1 0 1 2at 1396.209 kb on - strand, within OHPLBJKB_01353at 1396.280 kb on - strand, within OHPLBJKB_01353at 1396.402 kb on - strand, within OHPLBJKB_01353at 1396.424 kb on - strand, within OHPLBJKB_01353at 1396.478 kb on + strand, within OHPLBJKB_01353at 1396.514 kb on + strand, within OHPLBJKB_01353at 1396.515 kb on - strand, within OHPLBJKB_01353at 1396.534 kb on - strand, within OHPLBJKB_01353at 1396.536 kb on - strand, within OHPLBJKB_01353at 1396.657 kb on + strand, within OHPLBJKB_01353at 1396.680 kb on - strand, within OHPLBJKB_01353at 1396.682 kb on + strand, within OHPLBJKB_01353at 1396.682 kb on + strand, within OHPLBJKB_01353at 1396.682 kb on + strand, within OHPLBJKB_01353at 1396.768 kb on + strand, within OHPLBJKB_01353at 1396.769 kb on - strand, within OHPLBJKB_01353at 1396.876 kb on + strand, within OHPLBJKB_01353at 1396.892 kb on + strand, within OHPLBJKB_01353at 1396.892 kb on + strand, within OHPLBJKB_01353at 1396.893 kb on - strand, within OHPLBJKB_01353at 1396.893 kb on - strand, within OHPLBJKB_01353at 1396.962 kb on + strandat 1396.964 kb on + strandat 1397.012 kb on + strandat 1397.056 kb on + strandat 1397.150 kb on - strandat 1397.176 kb on - strandat 1397.284 kb on - strand, within OHPLBJKB_01354at 1397.292 kb on + strand, within OHPLBJKB_01354at 1397.683 kb on - strand, within OHPLBJKB_01354at 1397.926 kb on + strand, within OHPLBJKB_01354at 1397.960 kb on - strand, within OHPLBJKB_01354at 1397.960 kb on - strand, within OHPLBJKB_01354at 1398.145 kb on + strand, within OHPLBJKB_01354at 1398.146 kb on - strand, within OHPLBJKB_01354at 1398.202 kb on - strand, within OHPLBJKB_01354at 1398.413 kb on + strand, within OHPLBJKB_01354at 1398.414 kb on - strand, within OHPLBJKB_01354at 1398.414 kb on - strand, within OHPLBJKB_01354at 1398.520 kb on + strandat 1398.525 kb on + strandat 1398.526 kb on - strandat 1398.530 kb on - strandat 1398.587 kb on + strandat 1398.603 kb on + strandat 1398.625 kb on + strandat 1398.625 kb on + strandat 1398.625 kb on + strandat 1398.626 kb on - strandat 1398.626 kb on - strandat 1398.689 kb on + strandat 1398.690 kb on - strandat 1398.710 kb on + strandat 1398.817 kb on + strandat 1398.818 kb on - strandat 1398.879 kb on + strand, within OHPLBJKB_01355at 1398.880 kb on - strand, within OHPLBJKB_01355at 1398.914 kb on + strand, within OHPLBJKB_01355at 1398.915 kb on - strand, within OHPLBJKB_01355at 1398.915 kb on - strand, within OHPLBJKB_01355at 1398.915 kb on - strand, within OHPLBJKB_01355at 1398.915 kb on - strand, within OHPLBJKB_01355at 1398.915 kb on - strand, within OHPLBJKB_01355at 1398.938 kb on + strand, within OHPLBJKB_01355at 1398.938 kb on + strand, within OHPLBJKB_01355at 1398.938 kb on + strand, within OHPLBJKB_01355at 1398.939 kb on - strand, within OHPLBJKB_01355at 1399.086 kb on + strand, within OHPLBJKB_01355at 1399.086 kb on + strand, within OHPLBJKB_01355at 1399.086 kb on + strand, within OHPLBJKB_01355at 1399.086 kb on + strand, within OHPLBJKB_01355at 1399.086 kb on + strand, within OHPLBJKB_01355at 1399.086 kb on + strand, within OHPLBJKB_01355at 1399.087 kb on - strand, within OHPLBJKB_01355at 1399.087 kb on - strand, within OHPLBJKB_01355at 1399.087 kb on - strand, within OHPLBJKB_01355at 1399.087 kb on - strand, within OHPLBJKB_01355at 1399.087 kb on - strand, within OHPLBJKB_01355at 1399.197 kb on - strand, within OHPLBJKB_01355at 1399.197 kb on - strand, within OHPLBJKB_01355at 1399.255 kb on - strand, within OHPLBJKB_01355at 1399.348 kb on - strand, within OHPLBJKB_01355at 1399.348 kb on - strand, within OHPLBJKB_01355at 1399.348 kb on - strand, within OHPLBJKB_01355at 1399.374 kb on - strand, within OHPLBJKB_01355at 1399.386 kb on - strand, within OHPLBJKB_01355at 1399.399 kb on - strand, within OHPLBJKB_01355at 1399.452 kb on + strand, within OHPLBJKB_01355at 1399.453 kb on - strand, within OHPLBJKB_01355at 1399.453 kb on - strand, within OHPLBJKB_01355at 1399.489 kb on - strand, within OHPLBJKB_01355at 1399.489 kb on - strand, within OHPLBJKB_01355

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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1,396,209 - OHPLBJKB_01353 0.28 -1.7
1,396,280 - OHPLBJKB_01353 0.34 -1.6
1,396,402 - OHPLBJKB_01353 0.45 +0.7
1,396,424 - OHPLBJKB_01353 0.47 +0.2
1,396,478 + OHPLBJKB_01353 0.51 -0.7
1,396,514 + OHPLBJKB_01353 0.54 -1.7
1,396,515 - OHPLBJKB_01353 0.54 -0.3
1,396,534 - OHPLBJKB_01353 0.56 +0.7
1,396,536 - OHPLBJKB_01353 0.56 +0.4
1,396,657 + OHPLBJKB_01353 0.67 +0.4
1,396,680 - OHPLBJKB_01353 0.69 +0.0
1,396,682 + OHPLBJKB_01353 0.69 +0.0
1,396,682 + OHPLBJKB_01353 0.69 +0.3
1,396,682 + OHPLBJKB_01353 0.69 +0.0
1,396,768 + OHPLBJKB_01353 0.76 -0.4
1,396,769 - OHPLBJKB_01353 0.76 +1.9
1,396,876 + OHPLBJKB_01353 0.85 +0.0
1,396,892 + OHPLBJKB_01353 0.87 +0.4
1,396,892 + OHPLBJKB_01353 0.87 +0.1
1,396,893 - OHPLBJKB_01353 0.87 -0.6
1,396,893 - OHPLBJKB_01353 0.87 +0.9
1,396,962 + +0.3
1,396,964 + +0.2
1,397,012 + +0.8
1,397,056 + -0.8
1,397,150 - -0.6
1,397,176 - +0.8
1,397,284 - OHPLBJKB_01354 0.16 -0.5
1,397,292 + OHPLBJKB_01354 0.16 -0.5
1,397,683 - OHPLBJKB_01354 0.41 -1.0
1,397,926 + OHPLBJKB_01354 0.57 -0.5
1,397,960 - OHPLBJKB_01354 0.59 -0.6
1,397,960 - OHPLBJKB_01354 0.59 -1.5
1,398,145 + OHPLBJKB_01354 0.71 -1.3
1,398,146 - OHPLBJKB_01354 0.72 -0.1
1,398,202 - OHPLBJKB_01354 0.75 +0.3
1,398,413 + OHPLBJKB_01354 0.89 -1.1
1,398,414 - OHPLBJKB_01354 0.89 -0.2
1,398,414 - OHPLBJKB_01354 0.89 -0.3
1,398,520 + +0.7
1,398,525 + -1.5
1,398,526 - -0.3
1,398,530 - -0.8
1,398,587 + -0.2
1,398,603 + +0.3
1,398,625 + -0.5
1,398,625 + -0.6
1,398,625 + -1.2
1,398,626 - -1.3
1,398,626 - -0.2
1,398,689 + -0.7
1,398,690 - -0.1
1,398,710 + -0.3
1,398,817 + -1.1
1,398,818 - +0.9
1,398,879 + OHPLBJKB_01355 0.14 +2.3
1,398,880 - OHPLBJKB_01355 0.14 -0.6
1,398,914 + OHPLBJKB_01355 0.17 +0.3
1,398,915 - OHPLBJKB_01355 0.17 +0.3
1,398,915 - OHPLBJKB_01355 0.17 -0.1
1,398,915 - OHPLBJKB_01355 0.17 -0.5
1,398,915 - OHPLBJKB_01355 0.17 +0.6
1,398,915 - OHPLBJKB_01355 0.17 -0.4
1,398,938 + OHPLBJKB_01355 0.19 -0.6
1,398,938 + OHPLBJKB_01355 0.19 +1.0
1,398,938 + OHPLBJKB_01355 0.19 -1.1
1,398,939 - OHPLBJKB_01355 0.19 +0.0
1,399,086 + OHPLBJKB_01355 0.30 +0.9
1,399,086 + OHPLBJKB_01355 0.30 +0.9
1,399,086 + OHPLBJKB_01355 0.30 +2.0
1,399,086 + OHPLBJKB_01355 0.30 +0.7
1,399,086 + OHPLBJKB_01355 0.30 +0.1
1,399,086 + OHPLBJKB_01355 0.30 +0.3
1,399,087 - OHPLBJKB_01355 0.30 +0.0
1,399,087 - OHPLBJKB_01355 0.30 +0.6
1,399,087 - OHPLBJKB_01355 0.30 +0.3
1,399,087 - OHPLBJKB_01355 0.30 -1.0
1,399,087 - OHPLBJKB_01355 0.30 -0.7
1,399,197 - OHPLBJKB_01355 0.38 -0.8
1,399,197 - OHPLBJKB_01355 0.38 +0.3
1,399,255 - OHPLBJKB_01355 0.42 -0.8
1,399,348 - OHPLBJKB_01355 0.49 +0.1
1,399,348 - OHPLBJKB_01355 0.49 +0.3
1,399,348 - OHPLBJKB_01355 0.49 -0.4
1,399,374 - OHPLBJKB_01355 0.51 +1.2
1,399,386 - OHPLBJKB_01355 0.52 -1.7
1,399,399 - OHPLBJKB_01355 0.53 +0.3
1,399,452 + OHPLBJKB_01355 0.57 +0.2
1,399,453 - OHPLBJKB_01355 0.57 -0.7
1,399,453 - OHPLBJKB_01355 0.57 -1.7
1,399,489 - OHPLBJKB_01355 0.60 +0.7
1,399,489 - OHPLBJKB_01355 0.60 +0.8

Or see this region's nucleotide sequence