Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01197

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01195 and OHPLBJKB_01196 are separated by 17 nucleotidesOHPLBJKB_01196 and OHPLBJKB_01197 are separated by 10 nucleotidesOHPLBJKB_01197 and OHPLBJKB_01198 are separated by 117 nucleotides OHPLBJKB_01195: OHPLBJKB_01195 - Histidine--tRNA ligase, at 1,232,412 to 1,233,686 _01195 OHPLBJKB_01196: OHPLBJKB_01196 - hypothetical protein, at 1,233,704 to 1,234,324 _01196 OHPLBJKB_01197: OHPLBJKB_01197 - Outer membrane protein assembly factor BamB, at 1,234,335 to 1,235,513 _01197 OHPLBJKB_01198: OHPLBJKB_01198 - GTPase Der, at 1,235,631 to 1,237,103 _01198 Position (kb) 1234 1235 1236Strain fitness (log2 ratio) -2 -1 0 1at 1233.735 kb on + strandat 1233.735 kb on + strandat 1233.735 kb on + strandat 1233.735 kb on + strandat 1233.736 kb on - strandat 1233.956 kb on - strand, within OHPLBJKB_01196at 1233.960 kb on - strand, within OHPLBJKB_01196at 1233.960 kb on - strand, within OHPLBJKB_01196at 1234.014 kb on + strand, within OHPLBJKB_01196at 1234.014 kb on + strand, within OHPLBJKB_01196at 1234.110 kb on + strand, within OHPLBJKB_01196at 1234.150 kb on + strand, within OHPLBJKB_01196at 1234.270 kb on + strandat 1234.309 kb on + strandat 1234.512 kb on + strand, within OHPLBJKB_01197at 1234.551 kb on + strand, within OHPLBJKB_01197at 1234.574 kb on - strand, within OHPLBJKB_01197at 1234.576 kb on + strand, within OHPLBJKB_01197at 1234.663 kb on + strand, within OHPLBJKB_01197at 1234.701 kb on + strand, within OHPLBJKB_01197at 1234.702 kb on - strand, within OHPLBJKB_01197at 1234.702 kb on - strand, within OHPLBJKB_01197at 1234.769 kb on + strand, within OHPLBJKB_01197at 1234.846 kb on + strand, within OHPLBJKB_01197at 1234.846 kb on + strand, within OHPLBJKB_01197at 1234.889 kb on + strand, within OHPLBJKB_01197at 1235.027 kb on + strand, within OHPLBJKB_01197at 1235.121 kb on + strand, within OHPLBJKB_01197at 1235.121 kb on + strand, within OHPLBJKB_01197at 1235.121 kb on + strand, within OHPLBJKB_01197at 1235.121 kb on + strand, within OHPLBJKB_01197at 1235.122 kb on - strand, within OHPLBJKB_01197at 1235.123 kb on + strand, within OHPLBJKB_01197at 1235.165 kb on + strand, within OHPLBJKB_01197at 1235.165 kb on + strand, within OHPLBJKB_01197at 1235.223 kb on + strand, within OHPLBJKB_01197at 1235.223 kb on + strand, within OHPLBJKB_01197at 1235.331 kb on + strand, within OHPLBJKB_01197at 1235.331 kb on + strand, within OHPLBJKB_01197at 1235.333 kb on + strand, within OHPLBJKB_01197at 1235.423 kb on + strandat 1235.423 kb on + strandat 1235.501 kb on + strandat 1235.504 kb on + strandat 1235.504 kb on + strandat 1235.504 kb on + strandat 1235.571 kb on + strandat 1235.610 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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1,233,735 + -0.3
1,233,735 + -1.2
1,233,735 + -1.2
1,233,735 + +0.2
1,233,736 - +0.5
1,233,956 - OHPLBJKB_01196 0.41 -0.7
1,233,960 - OHPLBJKB_01196 0.41 -0.7
1,233,960 - OHPLBJKB_01196 0.41 -1.8
1,234,014 + OHPLBJKB_01196 0.50 -1.1
1,234,014 + OHPLBJKB_01196 0.50 -0.7
1,234,110 + OHPLBJKB_01196 0.65 +0.7
1,234,150 + OHPLBJKB_01196 0.72 -1.2
1,234,270 + -0.9
1,234,309 + -0.6
1,234,512 + OHPLBJKB_01197 0.15 -0.3
1,234,551 + OHPLBJKB_01197 0.18 +0.3
1,234,574 - OHPLBJKB_01197 0.20 -1.6
1,234,576 + OHPLBJKB_01197 0.20 -0.1
1,234,663 + OHPLBJKB_01197 0.28 +0.7
1,234,701 + OHPLBJKB_01197 0.31 -2.4
1,234,702 - OHPLBJKB_01197 0.31 +0.3
1,234,702 - OHPLBJKB_01197 0.31 -1.3
1,234,769 + OHPLBJKB_01197 0.37 -0.9
1,234,846 + OHPLBJKB_01197 0.43 -1.1
1,234,846 + OHPLBJKB_01197 0.43 -1.7
1,234,889 + OHPLBJKB_01197 0.47 +0.4
1,235,027 + OHPLBJKB_01197 0.59 +0.3
1,235,121 + OHPLBJKB_01197 0.67 -1.4
1,235,121 + OHPLBJKB_01197 0.67 -0.2
1,235,121 + OHPLBJKB_01197 0.67 -1.7
1,235,121 + OHPLBJKB_01197 0.67 -0.6
1,235,122 - OHPLBJKB_01197 0.67 -1.3
1,235,123 + OHPLBJKB_01197 0.67 -1.1
1,235,165 + OHPLBJKB_01197 0.70 -1.9
1,235,165 + OHPLBJKB_01197 0.70 -0.1
1,235,223 + OHPLBJKB_01197 0.75 -0.9
1,235,223 + OHPLBJKB_01197 0.75 -1.6
1,235,331 + OHPLBJKB_01197 0.84 -1.6
1,235,331 + OHPLBJKB_01197 0.84 +0.3
1,235,333 + OHPLBJKB_01197 0.85 -1.4
1,235,423 + +0.3
1,235,423 + +0.1
1,235,501 + -0.7
1,235,504 + -0.1
1,235,504 + -0.1
1,235,504 + +0.8
1,235,571 + -0.1
1,235,610 + -1.3

Or see this region's nucleotide sequence