Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01131

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01130 and OHPLBJKB_01131 are separated by 270 nucleotidesOHPLBJKB_01131 and OHPLBJKB_01132 are separated by 131 nucleotidesOHPLBJKB_01132 and OHPLBJKB_01133 overlap by 16 nucleotides OHPLBJKB_01130: OHPLBJKB_01130 - IS110 family transposase IS621, at 1,156,809 to 1,157,789 _01130 OHPLBJKB_01131: OHPLBJKB_01131 - ATP-dependent RNA helicase SrmB, at 1,158,060 to 1,159,394 _01131 OHPLBJKB_01132: OHPLBJKB_01132 - tRNA1(Val) (adenine(37)-N6)-methyltransferase, at 1,159,526 to 1,160,263 _01132 OHPLBJKB_01133: OHPLBJKB_01133 - L-aspartate oxidase, at 1,160,248 to 1,161,870 _01133 Position (kb) 1158 1159 1160Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1157.995 kb on + strandat 1158.031 kb on + strandat 1158.031 kb on + strandat 1158.034 kb on + strandat 1158.043 kb on + strandat 1158.044 kb on - strandat 1158.201 kb on + strand, within OHPLBJKB_01131at 1158.202 kb on - strand, within OHPLBJKB_01131at 1158.282 kb on - strand, within OHPLBJKB_01131at 1158.282 kb on - strand, within OHPLBJKB_01131at 1158.297 kb on - strand, within OHPLBJKB_01131at 1158.299 kb on - strand, within OHPLBJKB_01131at 1158.306 kb on + strand, within OHPLBJKB_01131at 1158.307 kb on - strand, within OHPLBJKB_01131at 1158.362 kb on + strand, within OHPLBJKB_01131at 1158.381 kb on - strand, within OHPLBJKB_01131at 1158.400 kb on + strand, within OHPLBJKB_01131at 1158.401 kb on - strand, within OHPLBJKB_01131at 1158.401 kb on - strand, within OHPLBJKB_01131at 1158.401 kb on - strand, within OHPLBJKB_01131at 1158.405 kb on - strand, within OHPLBJKB_01131at 1158.493 kb on - strand, within OHPLBJKB_01131at 1158.546 kb on + strand, within OHPLBJKB_01131at 1158.565 kb on + strand, within OHPLBJKB_01131at 1158.719 kb on - strand, within OHPLBJKB_01131at 1158.875 kb on + strand, within OHPLBJKB_01131at 1158.875 kb on + strand, within OHPLBJKB_01131at 1158.875 kb on + strand, within OHPLBJKB_01131at 1158.875 kb on + strand, within OHPLBJKB_01131at 1158.875 kb on + strand, within OHPLBJKB_01131at 1158.875 kb on + strand, within OHPLBJKB_01131at 1158.876 kb on - strand, within OHPLBJKB_01131at 1158.912 kb on - strand, within OHPLBJKB_01131at 1158.912 kb on - strand, within OHPLBJKB_01131at 1158.912 kb on - strand, within OHPLBJKB_01131at 1158.912 kb on - strand, within OHPLBJKB_01131at 1158.912 kb on - strand, within OHPLBJKB_01131at 1158.972 kb on + strand, within OHPLBJKB_01131at 1158.972 kb on + strand, within OHPLBJKB_01131at 1158.973 kb on - strand, within OHPLBJKB_01131at 1158.976 kb on + strand, within OHPLBJKB_01131at 1158.976 kb on + strand, within OHPLBJKB_01131at 1158.976 kb on + strand, within OHPLBJKB_01131at 1158.977 kb on - strand, within OHPLBJKB_01131at 1158.977 kb on - strand, within OHPLBJKB_01131at 1158.977 kb on - strand, within OHPLBJKB_01131at 1159.046 kb on + strand, within OHPLBJKB_01131at 1159.047 kb on - strand, within OHPLBJKB_01131at 1159.047 kb on - strand, within OHPLBJKB_01131at 1159.047 kb on - strand, within OHPLBJKB_01131at 1159.048 kb on + strand, within OHPLBJKB_01131at 1159.048 kb on + strand, within OHPLBJKB_01131at 1159.048 kb on + strand, within OHPLBJKB_01131at 1159.048 kb on + strand, within OHPLBJKB_01131at 1159.048 kb on + strand, within OHPLBJKB_01131at 1159.048 kb on + strand, within OHPLBJKB_01131at 1159.048 kb on + strand, within OHPLBJKB_01131at 1159.048 kb on + strand, within OHPLBJKB_01131at 1159.048 kb on + strand, within OHPLBJKB_01131at 1159.049 kb on - strand, within OHPLBJKB_01131at 1159.049 kb on - strand, within OHPLBJKB_01131at 1159.049 kb on - strand, within OHPLBJKB_01131at 1159.049 kb on - strand, within OHPLBJKB_01131at 1159.088 kb on + strand, within OHPLBJKB_01131at 1159.089 kb on - strand, within OHPLBJKB_01131at 1159.089 kb on - strand, within OHPLBJKB_01131at 1159.089 kb on - strand, within OHPLBJKB_01131at 1159.089 kb on - strand, within OHPLBJKB_01131at 1159.263 kb on + strandat 1159.263 kb on + strandat 1159.399 kb on + strandat 1159.399 kb on + strandat 1159.399 kb on + strandat 1159.400 kb on - strandat 1159.400 kb on - strandat 1159.400 kb on - strandat 1159.421 kb on + strandat 1159.423 kb on + strandat 1159.424 kb on - strandat 1159.455 kb on + strandat 1159.455 kb on + strandat 1159.456 kb on - strandat 1159.537 kb on + strandat 1159.537 kb on + strandat 1159.537 kb on + strandat 1159.538 kb on - strandat 1159.538 kb on - strandat 1159.538 kb on - strandat 1159.624 kb on + strand, within OHPLBJKB_01132at 1159.624 kb on + strand, within OHPLBJKB_01132at 1159.705 kb on - strand, within OHPLBJKB_01132at 1159.705 kb on - strand, within OHPLBJKB_01132at 1159.789 kb on + strand, within OHPLBJKB_01132at 1159.837 kb on + strand, within OHPLBJKB_01132at 1159.898 kb on + strand, within OHPLBJKB_01132at 1159.898 kb on + strand, within OHPLBJKB_01132at 1159.899 kb on - strand, within OHPLBJKB_01132at 1159.899 kb on - strand, within OHPLBJKB_01132at 1159.899 kb on - strand, within OHPLBJKB_01132at 1159.915 kb on - strand, within OHPLBJKB_01132at 1159.958 kb on - strand, within OHPLBJKB_01132at 1160.025 kb on + strand, within OHPLBJKB_01132at 1160.070 kb on + strand, within OHPLBJKB_01132at 1160.071 kb on - strand, within OHPLBJKB_01132at 1160.089 kb on - strand, within OHPLBJKB_01132at 1160.177 kb on - strand, within OHPLBJKB_01132at 1160.214 kb on - strandat 1160.214 kb on - strandat 1160.214 kb on - strandat 1160.214 kb on - strandat 1160.225 kb on + strandat 1160.225 kb on + strandat 1160.225 kb on + strandat 1160.226 kb on - strandat 1160.226 kb on - strandat 1160.257 kb on + strandat 1160.257 kb on + strandat 1160.258 kb on - strandat 1160.261 kb on + strandat 1160.261 kb on + strandat 1160.261 kb on + strandat 1160.262 kb on - strandat 1160.389 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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1,157,995 + -1.1
1,158,031 + +0.5
1,158,031 + +0.6
1,158,034 + -0.1
1,158,043 + -0.5
1,158,044 - +0.4
1,158,201 + OHPLBJKB_01131 0.11 -0.6
1,158,202 - OHPLBJKB_01131 0.11 +1.1
1,158,282 - OHPLBJKB_01131 0.17 -1.7
1,158,282 - OHPLBJKB_01131 0.17 -0.7
1,158,297 - OHPLBJKB_01131 0.18 -1.2
1,158,299 - OHPLBJKB_01131 0.18 -0.6
1,158,306 + OHPLBJKB_01131 0.18 -0.3
1,158,307 - OHPLBJKB_01131 0.19 -1.6
1,158,362 + OHPLBJKB_01131 0.23 -0.0
1,158,381 - OHPLBJKB_01131 0.24 -2.1
1,158,400 + OHPLBJKB_01131 0.25 +0.3
1,158,401 - OHPLBJKB_01131 0.26 -0.3
1,158,401 - OHPLBJKB_01131 0.26 -2.3
1,158,401 - OHPLBJKB_01131 0.26 -1.1
1,158,405 - OHPLBJKB_01131 0.26 +0.3
1,158,493 - OHPLBJKB_01131 0.32 +0.3
1,158,546 + OHPLBJKB_01131 0.36 -0.3
1,158,565 + OHPLBJKB_01131 0.38 +1.8
1,158,719 - OHPLBJKB_01131 0.49 +0.7
1,158,875 + OHPLBJKB_01131 0.61 +0.8
1,158,875 + OHPLBJKB_01131 0.61 -0.3
1,158,875 + OHPLBJKB_01131 0.61 -1.7
1,158,875 + OHPLBJKB_01131 0.61 -2.2
1,158,875 + OHPLBJKB_01131 0.61 -0.6
1,158,875 + OHPLBJKB_01131 0.61 -0.7
1,158,876 - OHPLBJKB_01131 0.61 -0.3
1,158,912 - OHPLBJKB_01131 0.64 -1.7
1,158,912 - OHPLBJKB_01131 0.64 -1.3
1,158,912 - OHPLBJKB_01131 0.64 -1.1
1,158,912 - OHPLBJKB_01131 0.64 -2.3
1,158,912 - OHPLBJKB_01131 0.64 +1.8
1,158,972 + OHPLBJKB_01131 0.68 -0.1
1,158,972 + OHPLBJKB_01131 0.68 +0.5
1,158,973 - OHPLBJKB_01131 0.68 -0.7
1,158,976 + OHPLBJKB_01131 0.69 -1.8
1,158,976 + OHPLBJKB_01131 0.69 -0.3
1,158,976 + OHPLBJKB_01131 0.69 -0.7
1,158,977 - OHPLBJKB_01131 0.69 -0.7
1,158,977 - OHPLBJKB_01131 0.69 -1.7
1,158,977 - OHPLBJKB_01131 0.69 -1.3
1,159,046 + OHPLBJKB_01131 0.74 -2.8
1,159,047 - OHPLBJKB_01131 0.74 -1.6
1,159,047 - OHPLBJKB_01131 0.74 +1.0
1,159,047 - OHPLBJKB_01131 0.74 -0.9
1,159,048 + OHPLBJKB_01131 0.74 +0.5
1,159,048 + OHPLBJKB_01131 0.74 -1.2
1,159,048 + OHPLBJKB_01131 0.74 -0.7
1,159,048 + OHPLBJKB_01131 0.74 -0.2
1,159,048 + OHPLBJKB_01131 0.74 -1.3
1,159,048 + OHPLBJKB_01131 0.74 -1.6
1,159,048 + OHPLBJKB_01131 0.74 -1.2
1,159,048 + OHPLBJKB_01131 0.74 -2.4
1,159,048 + OHPLBJKB_01131 0.74 -2.1
1,159,049 - OHPLBJKB_01131 0.74 -1.2
1,159,049 - OHPLBJKB_01131 0.74 +1.3
1,159,049 - OHPLBJKB_01131 0.74 +0.8
1,159,049 - OHPLBJKB_01131 0.74 -1.8
1,159,088 + OHPLBJKB_01131 0.77 -2.4
1,159,089 - OHPLBJKB_01131 0.77 -1.6
1,159,089 - OHPLBJKB_01131 0.77 -1.3
1,159,089 - OHPLBJKB_01131 0.77 +1.3
1,159,089 - OHPLBJKB_01131 0.77 -1.1
1,159,263 + -1.9
1,159,263 + -0.3
1,159,399 + -1.7
1,159,399 + -1.3
1,159,399 + +0.0
1,159,400 - +0.6
1,159,400 - -0.1
1,159,400 - -1.1
1,159,421 + -0.3
1,159,423 + +0.7
1,159,424 - -0.5
1,159,455 + -0.4
1,159,455 + -0.4
1,159,456 - +0.7
1,159,537 + +0.7
1,159,537 + +0.1
1,159,537 + +0.4
1,159,538 - +0.2
1,159,538 - -0.2
1,159,538 - -1.0
1,159,624 + OHPLBJKB_01132 0.13 -1.0
1,159,624 + OHPLBJKB_01132 0.13 -0.0
1,159,705 - OHPLBJKB_01132 0.24 +0.3
1,159,705 - OHPLBJKB_01132 0.24 -1.7
1,159,789 + OHPLBJKB_01132 0.36 -1.0
1,159,837 + OHPLBJKB_01132 0.42 +0.3
1,159,898 + OHPLBJKB_01132 0.50 +0.1
1,159,898 + OHPLBJKB_01132 0.50 +0.9
1,159,899 - OHPLBJKB_01132 0.51 -0.1
1,159,899 - OHPLBJKB_01132 0.51 -0.4
1,159,899 - OHPLBJKB_01132 0.51 +0.9
1,159,915 - OHPLBJKB_01132 0.53 -0.0
1,159,958 - OHPLBJKB_01132 0.59 +0.3
1,160,025 + OHPLBJKB_01132 0.68 -0.6
1,160,070 + OHPLBJKB_01132 0.74 -0.2
1,160,071 - OHPLBJKB_01132 0.74 -2.3
1,160,089 - OHPLBJKB_01132 0.76 -0.3
1,160,177 - OHPLBJKB_01132 0.88 -0.0
1,160,214 - -0.5
1,160,214 - -0.1
1,160,214 - +0.7
1,160,214 - -1.7
1,160,225 + +0.7
1,160,225 + -0.4
1,160,225 + -2.6
1,160,226 - +0.5
1,160,226 - +1.4
1,160,257 + -0.3
1,160,257 + -0.1
1,160,258 - -1.3
1,160,261 + -0.4
1,160,261 + -0.8
1,160,261 + +0.8
1,160,262 - +1.0
1,160,389 + -0.5

Or see this region's nucleotide sequence