Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_01035

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_01033 and OHPLBJKB_01034 are separated by 144 nucleotidesOHPLBJKB_01034 and OHPLBJKB_01035 are separated by 79 nucleotidesOHPLBJKB_01035 and OHPLBJKB_01036 are separated by 68 nucleotidesOHPLBJKB_01036 and OHPLBJKB_01037 are separated by 127 nucleotides OHPLBJKB_01033: OHPLBJKB_01033 - Membrane-bound lytic murein transglycosylase B, at 1,067,803 to 1,068,993 _01033 OHPLBJKB_01034: OHPLBJKB_01034 - Nicotinamide-nucleotide amidohydrolase PncC, at 1,069,138 to 1,069,635 _01034 OHPLBJKB_01035: OHPLBJKB_01035 - Protein RecA, at 1,069,715 to 1,070,776 _01035 OHPLBJKB_01036: OHPLBJKB_01036 - Regulatory protein RecX, at 1,070,845 to 1,071,345 _01036 OHPLBJKB_01037: OHPLBJKB_01037 - Alanine--tRNA ligase, at 1,071,473 to 1,074,103 _01037 Position (kb) 1069 1070 1071Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1068.771 kb on + strand, within OHPLBJKB_01033at 1068.771 kb on + strand, within OHPLBJKB_01033at 1068.771 kb on + strand, within OHPLBJKB_01033at 1068.772 kb on - strand, within OHPLBJKB_01033at 1068.772 kb on - strand, within OHPLBJKB_01033at 1068.772 kb on - strand, within OHPLBJKB_01033at 1068.772 kb on - strand, within OHPLBJKB_01033at 1068.772 kb on - strand, within OHPLBJKB_01033at 1068.772 kb on - strand, within OHPLBJKB_01033at 1068.775 kb on + strand, within OHPLBJKB_01033at 1068.775 kb on + strand, within OHPLBJKB_01033at 1068.776 kb on - strand, within OHPLBJKB_01033at 1068.776 kb on - strand, within OHPLBJKB_01033at 1068.776 kb on - strand, within OHPLBJKB_01033at 1068.807 kb on - strand, within OHPLBJKB_01033at 1068.904 kb on + strandat 1068.904 kb on + strandat 1068.904 kb on + strandat 1068.905 kb on - strandat 1068.905 kb on - strandat 1068.905 kb on - strandat 1068.959 kb on + strandat 1068.960 kb on - strandat 1068.960 kb on - strandat 1068.960 kb on - strandat 1068.960 kb on - strandat 1068.986 kb on + strandat 1068.986 kb on + strandat 1068.986 kb on + strandat 1068.986 kb on + strandat 1068.987 kb on - strandat 1068.987 kb on - strandat 1068.987 kb on - strandat 1068.991 kb on + strandat 1068.991 kb on + strandat 1068.991 kb on + strandat 1068.991 kb on + strandat 1068.991 kb on + strandat 1068.991 kb on + strandat 1068.992 kb on - strandat 1068.992 kb on - strandat 1068.992 kb on - strandat 1068.992 kb on - strandat 1068.992 kb on - strandat 1068.992 kb on - strandat 1068.995 kb on + strandat 1068.995 kb on + strandat 1068.995 kb on + strandat 1068.995 kb on + strandat 1068.996 kb on - strandat 1068.996 kb on - strandat 1068.996 kb on - strandat 1068.996 kb on - strandat 1068.996 kb on - strandat 1068.996 kb on - strandat 1068.996 kb on - strandat 1068.996 kb on - strandat 1068.999 kb on + strandat 1068.999 kb on + strandat 1069.000 kb on - strandat 1069.098 kb on + strandat 1069.098 kb on + strandat 1069.098 kb on + strandat 1069.099 kb on - strandat 1069.164 kb on - strandat 1069.164 kb on - strandat 1069.208 kb on + strand, within OHPLBJKB_01034at 1069.208 kb on + strand, within OHPLBJKB_01034at 1069.227 kb on + strand, within OHPLBJKB_01034at 1069.254 kb on + strand, within OHPLBJKB_01034at 1069.303 kb on + strand, within OHPLBJKB_01034at 1069.303 kb on + strand, within OHPLBJKB_01034at 1069.303 kb on + strand, within OHPLBJKB_01034at 1069.303 kb on + strand, within OHPLBJKB_01034at 1069.304 kb on - strand, within OHPLBJKB_01034at 1069.304 kb on - strand, within OHPLBJKB_01034at 1069.304 kb on - strand, within OHPLBJKB_01034at 1069.304 kb on - strand, within OHPLBJKB_01034at 1069.304 kb on - strand, within OHPLBJKB_01034at 1069.304 kb on - strand, within OHPLBJKB_01034at 1069.304 kb on - strand, within OHPLBJKB_01034at 1069.304 kb on - strand, within OHPLBJKB_01034at 1069.429 kb on + strand, within OHPLBJKB_01034at 1069.440 kb on + strand, within OHPLBJKB_01034at 1069.440 kb on + strand, within OHPLBJKB_01034at 1069.441 kb on - strand, within OHPLBJKB_01034at 1069.441 kb on - strand, within OHPLBJKB_01034at 1069.441 kb on - strand, within OHPLBJKB_01034at 1069.441 kb on - strand, within OHPLBJKB_01034at 1069.443 kb on + strand, within OHPLBJKB_01034at 1069.444 kb on - strand, within OHPLBJKB_01034at 1069.444 kb on - strand, within OHPLBJKB_01034at 1069.592 kb on - strandat 1069.592 kb on - strandat 1069.592 kb on - strandat 1069.622 kb on + strandat 1069.675 kb on + strandat 1069.675 kb on + strandat 1069.676 kb on - strandat 1069.689 kb on + strandat 1070.024 kb on + strand, within OHPLBJKB_01035at 1070.224 kb on + strand, within OHPLBJKB_01035at 1070.225 kb on - strand, within OHPLBJKB_01035at 1070.225 kb on - strand, within OHPLBJKB_01035at 1070.245 kb on + strand, within OHPLBJKB_01035at 1070.370 kb on - strand, within OHPLBJKB_01035at 1070.370 kb on - strand, within OHPLBJKB_01035at 1070.518 kb on + strand, within OHPLBJKB_01035at 1070.594 kb on + strand, within OHPLBJKB_01035at 1070.595 kb on - strand, within OHPLBJKB_01035at 1070.650 kb on + strand, within OHPLBJKB_01035at 1070.685 kb on + strandat 1070.685 kb on + strandat 1070.685 kb on + strandat 1070.685 kb on + strandat 1070.733 kb on + strandat 1070.733 kb on + strandat 1070.733 kb on + strandat 1070.733 kb on + strandat 1070.734 kb on - strandat 1070.740 kb on + strandat 1070.762 kb on - strandat 1070.774 kb on + strandat 1070.790 kb on + strandat 1070.791 kb on - strandat 1070.791 kb on - strandat 1070.826 kb on + strandat 1070.827 kb on - strandat 1070.827 kb on - strandat 1070.827 kb on - strandat 1070.833 kb on + strandat 1070.834 kb on - strandat 1070.834 kb on - strandat 1070.834 kb on - strandat 1070.840 kb on - strandat 1070.875 kb on + strandat 1070.875 kb on + strandat 1070.875 kb on + strandat 1070.875 kb on + strandat 1070.875 kb on + strandat 1070.875 kb on + strandat 1070.875 kb on + strandat 1070.875 kb on + strandat 1070.876 kb on - strandat 1070.876 kb on - strandat 1070.901 kb on - strand, within OHPLBJKB_01036at 1070.946 kb on + strand, within OHPLBJKB_01036at 1070.947 kb on - strand, within OHPLBJKB_01036at 1071.011 kb on - strand, within OHPLBJKB_01036at 1071.011 kb on - strand, within OHPLBJKB_01036at 1071.046 kb on + strand, within OHPLBJKB_01036at 1071.046 kb on + strand, within OHPLBJKB_01036at 1071.047 kb on - strand, within OHPLBJKB_01036at 1071.047 kb on - strand, within OHPLBJKB_01036at 1071.090 kb on + strand, within OHPLBJKB_01036at 1071.104 kb on - strand, within OHPLBJKB_01036at 1071.144 kb on + strand, within OHPLBJKB_01036at 1071.144 kb on + strand, within OHPLBJKB_01036at 1071.144 kb on + strand, within OHPLBJKB_01036at 1071.144 kb on + strand, within OHPLBJKB_01036at 1071.145 kb on - strand, within OHPLBJKB_01036at 1071.145 kb on - strand, within OHPLBJKB_01036at 1071.145 kb on - strand, within OHPLBJKB_01036at 1071.145 kb on - strand, within OHPLBJKB_01036at 1071.145 kb on - strand, within OHPLBJKB_01036at 1071.229 kb on + strand, within OHPLBJKB_01036at 1071.229 kb on + strand, within OHPLBJKB_01036at 1071.230 kb on - strand, within OHPLBJKB_01036at 1071.268 kb on - strand, within OHPLBJKB_01036at 1071.268 kb on - strand, within OHPLBJKB_01036at 1071.298 kb on + strandat 1071.312 kb on + strandat 1071.312 kb on + strandat 1071.313 kb on - strandat 1071.313 kb on - strandat 1071.352 kb on - strandat 1071.356 kb on + strandat 1071.357 kb on - strandat 1071.357 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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1,068,771 + OHPLBJKB_01033 0.81 +1.3
1,068,771 + OHPLBJKB_01033 0.81 +1.7
1,068,771 + OHPLBJKB_01033 0.81 -0.7
1,068,772 - OHPLBJKB_01033 0.81 -2.1
1,068,772 - OHPLBJKB_01033 0.81 -0.4
1,068,772 - OHPLBJKB_01033 0.81 +0.5
1,068,772 - OHPLBJKB_01033 0.81 +0.3
1,068,772 - OHPLBJKB_01033 0.81 +0.5
1,068,772 - OHPLBJKB_01033 0.81 -0.2
1,068,775 + OHPLBJKB_01033 0.82 +0.2
1,068,775 + OHPLBJKB_01033 0.82 +0.5
1,068,776 - OHPLBJKB_01033 0.82 -0.4
1,068,776 - OHPLBJKB_01033 0.82 -0.1
1,068,776 - OHPLBJKB_01033 0.82 +0.3
1,068,807 - OHPLBJKB_01033 0.84 -0.1
1,068,904 + -0.9
1,068,904 + +0.1
1,068,904 + -0.1
1,068,905 - -0.6
1,068,905 - -1.0
1,068,905 - +0.8
1,068,959 + +0.5
1,068,960 - +0.4
1,068,960 - +0.3
1,068,960 - -1.1
1,068,960 - +2.1
1,068,986 + -0.3
1,068,986 + +0.2
1,068,986 + +0.3
1,068,986 + +0.3
1,068,987 - +1.1
1,068,987 - -0.3
1,068,987 - -0.9
1,068,991 + -0.2
1,068,991 + -0.2
1,068,991 + +2.3
1,068,991 + -0.0
1,068,991 + +0.1
1,068,991 + +1.3
1,068,992 - +0.3
1,068,992 - -0.5
1,068,992 - -0.7
1,068,992 - +1.7
1,068,992 - -0.6
1,068,992 - +0.7
1,068,995 + +0.3
1,068,995 + +0.2
1,068,995 + +0.2
1,068,995 + +0.3
1,068,996 - +0.5
1,068,996 - -0.6
1,068,996 - +0.7
1,068,996 - -0.9
1,068,996 - +0.4
1,068,996 - +0.4
1,068,996 - -0.5
1,068,996 - -0.8
1,068,999 + +0.7
1,068,999 + -0.7
1,069,000 - -1.4
1,069,098 + +0.3
1,069,098 + +0.7
1,069,098 + -0.2
1,069,099 - -0.2
1,069,164 - -0.3
1,069,164 - -0.9
1,069,208 + OHPLBJKB_01034 0.14 -0.4
1,069,208 + OHPLBJKB_01034 0.14 +0.2
1,069,227 + OHPLBJKB_01034 0.18 +0.3
1,069,254 + OHPLBJKB_01034 0.23 +0.4
1,069,303 + OHPLBJKB_01034 0.33 -0.1
1,069,303 + OHPLBJKB_01034 0.33 +0.3
1,069,303 + OHPLBJKB_01034 0.33 -0.3
1,069,303 + OHPLBJKB_01034 0.33 +0.7
1,069,304 - OHPLBJKB_01034 0.33 +0.1
1,069,304 - OHPLBJKB_01034 0.33 +0.5
1,069,304 - OHPLBJKB_01034 0.33 -0.1
1,069,304 - OHPLBJKB_01034 0.33 +0.1
1,069,304 - OHPLBJKB_01034 0.33 -0.3
1,069,304 - OHPLBJKB_01034 0.33 -1.1
1,069,304 - OHPLBJKB_01034 0.33 -0.1
1,069,304 - OHPLBJKB_01034 0.33 +0.4
1,069,429 + OHPLBJKB_01034 0.58 -0.1
1,069,440 + OHPLBJKB_01034 0.61 -0.5
1,069,440 + OHPLBJKB_01034 0.61 -0.7
1,069,441 - OHPLBJKB_01034 0.61 -0.1
1,069,441 - OHPLBJKB_01034 0.61 +0.4
1,069,441 - OHPLBJKB_01034 0.61 +0.4
1,069,441 - OHPLBJKB_01034 0.61 +0.0
1,069,443 + OHPLBJKB_01034 0.61 -0.1
1,069,444 - OHPLBJKB_01034 0.61 -0.2
1,069,444 - OHPLBJKB_01034 0.61 +0.5
1,069,592 - -0.5
1,069,592 - -1.2
1,069,592 - +0.3
1,069,622 + +0.0
1,069,675 + -1.6
1,069,675 + -1.1
1,069,676 - -1.1
1,069,689 + -0.7
1,070,024 + OHPLBJKB_01035 0.29 -0.1
1,070,224 + OHPLBJKB_01035 0.48 -1.1
1,070,225 - OHPLBJKB_01035 0.48 +1.3
1,070,225 - OHPLBJKB_01035 0.48 -1.1
1,070,245 + OHPLBJKB_01035 0.50 -1.1
1,070,370 - OHPLBJKB_01035 0.62 -0.7
1,070,370 - OHPLBJKB_01035 0.62 -1.3
1,070,518 + OHPLBJKB_01035 0.76 +0.7
1,070,594 + OHPLBJKB_01035 0.83 -0.3
1,070,595 - OHPLBJKB_01035 0.83 -1.1
1,070,650 + OHPLBJKB_01035 0.88 -1.3
1,070,685 + -0.4
1,070,685 + -1.2
1,070,685 + -3.1
1,070,685 + +0.3
1,070,733 + -1.7
1,070,733 + +0.6
1,070,733 + -0.9
1,070,733 + +0.3
1,070,734 - -1.1
1,070,740 + -0.2
1,070,762 - -0.7
1,070,774 + +1.3
1,070,790 + -0.6
1,070,791 - -1.7
1,070,791 - -0.1
1,070,826 + +0.4
1,070,827 - -0.6
1,070,827 - -0.3
1,070,827 - +0.5
1,070,833 + +0.8
1,070,834 - +0.1
1,070,834 - -0.8
1,070,834 - -0.1
1,070,840 - +1.0
1,070,875 + -0.4
1,070,875 + +0.3
1,070,875 + -0.3
1,070,875 + -1.9
1,070,875 + -0.4
1,070,875 + -0.1
1,070,875 + +0.3
1,070,875 + +0.3
1,070,876 - +0.2
1,070,876 - +1.6
1,070,901 - OHPLBJKB_01036 0.11 +0.4
1,070,946 + OHPLBJKB_01036 0.20 -1.3
1,070,947 - OHPLBJKB_01036 0.20 -0.5
1,071,011 - OHPLBJKB_01036 0.33 +1.3
1,071,011 - OHPLBJKB_01036 0.33 -0.2
1,071,046 + OHPLBJKB_01036 0.40 -0.6
1,071,046 + OHPLBJKB_01036 0.40 +0.6
1,071,047 - OHPLBJKB_01036 0.40 +0.3
1,071,047 - OHPLBJKB_01036 0.40 -0.5
1,071,090 + OHPLBJKB_01036 0.49 +0.4
1,071,104 - OHPLBJKB_01036 0.52 -0.0
1,071,144 + OHPLBJKB_01036 0.60 -0.7
1,071,144 + OHPLBJKB_01036 0.60 -1.1
1,071,144 + OHPLBJKB_01036 0.60 -0.5
1,071,144 + OHPLBJKB_01036 0.60 +0.4
1,071,145 - OHPLBJKB_01036 0.60 +0.3
1,071,145 - OHPLBJKB_01036 0.60 -0.7
1,071,145 - OHPLBJKB_01036 0.60 -0.5
1,071,145 - OHPLBJKB_01036 0.60 +0.4
1,071,145 - OHPLBJKB_01036 0.60 -0.3
1,071,229 + OHPLBJKB_01036 0.77 -1.3
1,071,229 + OHPLBJKB_01036 0.77 -0.7
1,071,230 - OHPLBJKB_01036 0.77 -0.1
1,071,268 - OHPLBJKB_01036 0.84 +0.2
1,071,268 - OHPLBJKB_01036 0.84 -0.9
1,071,298 + +0.3
1,071,312 + -1.6
1,071,312 + -0.4
1,071,313 - +0.1
1,071,313 - -0.4
1,071,352 - +0.8
1,071,356 + +1.3
1,071,357 - +0.8
1,071,357 - -1.7

Or see this region's nucleotide sequence