Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00479

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00477 and OHPLBJKB_00478 are separated by 56 nucleotidesOHPLBJKB_00478 and OHPLBJKB_00479 are separated by 378 nucleotidesOHPLBJKB_00479 and OHPLBJKB_00480 are separated by 121 nucleotides OHPLBJKB_00477: OHPLBJKB_00477 - Putative cryptic C4-dicarboxylate transporter DcuD, at 491,077 to 492,066 _00477 OHPLBJKB_00478: OHPLBJKB_00478 - Putative cryptic C4-dicarboxylate transporter DcuD, at 492,123 to 492,443 _00478 OHPLBJKB_00479: OHPLBJKB_00479 - HTH-type transcriptional repressor NanR, at 492,822 to 493,613 _00479 OHPLBJKB_00480: OHPLBJKB_00480 - N-acetylneuraminate lyase, at 493,735 to 494,628 _00480 Position (kb) 492 493 494Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 491.870 kb on + strand, within OHPLBJKB_00477at 491.870 kb on + strand, within OHPLBJKB_00477at 491.870 kb on + strand, within OHPLBJKB_00477at 491.870 kb on + strand, within OHPLBJKB_00477at 491.870 kb on + strand, within OHPLBJKB_00477at 491.870 kb on + strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.871 kb on - strand, within OHPLBJKB_00477at 491.984 kb on - strandat 492.011 kb on - strandat 492.030 kb on + strandat 492.030 kb on + strandat 492.054 kb on + strandat 492.083 kb on + strandat 492.083 kb on + strandat 492.083 kb on + strandat 492.083 kb on + strandat 492.083 kb on + strandat 492.084 kb on - strandat 492.084 kb on - strandat 492.084 kb on - strandat 492.084 kb on - strandat 492.084 kb on - strandat 492.099 kb on + strandat 492.099 kb on + strandat 492.102 kb on + strandat 492.102 kb on + strandat 492.259 kb on + strand, within OHPLBJKB_00478at 492.260 kb on - strand, within OHPLBJKB_00478at 492.260 kb on - strand, within OHPLBJKB_00478at 492.260 kb on - strand, within OHPLBJKB_00478at 492.277 kb on + strand, within OHPLBJKB_00478at 492.303 kb on + strand, within OHPLBJKB_00478at 492.407 kb on + strand, within OHPLBJKB_00478at 492.414 kb on + strandat 492.426 kb on + strandat 492.428 kb on + strandat 492.429 kb on - strandat 492.429 kb on - strandat 492.429 kb on - strandat 492.429 kb on - strandat 492.429 kb on - strandat 492.432 kb on + strandat 492.526 kb on - strandat 492.526 kb on - strandat 492.526 kb on - strandat 492.622 kb on - strandat 492.646 kb on + strandat 492.647 kb on - strandat 492.652 kb on + strandat 492.681 kb on + strandat 492.719 kb on + strandat 492.801 kb on + strandat 492.802 kb on - strandat 492.816 kb on + strandat 492.817 kb on - strandat 492.985 kb on + strand, within OHPLBJKB_00479at 492.985 kb on + strand, within OHPLBJKB_00479at 493.081 kb on + strand, within OHPLBJKB_00479at 493.082 kb on - strand, within OHPLBJKB_00479at 493.082 kb on - strand, within OHPLBJKB_00479at 493.127 kb on + strand, within OHPLBJKB_00479at 493.128 kb on - strand, within OHPLBJKB_00479at 493.201 kb on + strand, within OHPLBJKB_00479at 493.201 kb on + strand, within OHPLBJKB_00479at 493.201 kb on + strand, within OHPLBJKB_00479at 493.201 kb on + strand, within OHPLBJKB_00479at 493.201 kb on + strand, within OHPLBJKB_00479at 493.202 kb on - strand, within OHPLBJKB_00479at 493.202 kb on - strand, within OHPLBJKB_00479at 493.202 kb on - strand, within OHPLBJKB_00479at 493.202 kb on - strand, within OHPLBJKB_00479at 493.202 kb on - strand, within OHPLBJKB_00479at 493.202 kb on - strand, within OHPLBJKB_00479at 493.571 kb on + strandat 493.572 kb on - strandat 493.611 kb on + strandat 493.611 kb on + strandat 493.612 kb on - strandat 493.641 kb on - strandat 493.642 kb on + strandat 493.642 kb on + strandat 493.642 kb on + strandat 493.642 kb on + strandat 493.643 kb on - strandat 493.643 kb on - strandat 493.643 kb on - strandat 493.643 kb on - strandat 493.654 kb on - strandat 493.654 kb on - strandat 493.667 kb on + strandat 493.667 kb on + strandat 493.668 kb on - strandat 493.668 kb on - strandat 493.668 kb on - strandat 493.734 kb on + strandat 493.734 kb on + strandat 493.735 kb on - strandat 493.860 kb on - strand, within OHPLBJKB_00480at 493.861 kb on + strand, within OHPLBJKB_00480at 493.861 kb on + strand, within OHPLBJKB_00480at 493.861 kb on + strand, within OHPLBJKB_00480at 493.861 kb on + strand, within OHPLBJKB_00480at 493.861 kb on + strand, within OHPLBJKB_00480at 493.862 kb on - strand, within OHPLBJKB_00480at 493.862 kb on - strand, within OHPLBJKB_00480at 493.862 kb on - strand, within OHPLBJKB_00480at 493.892 kb on + strand, within OHPLBJKB_00480at 493.892 kb on + strand, within OHPLBJKB_00480at 493.892 kb on + strand, within OHPLBJKB_00480at 493.893 kb on - strand, within OHPLBJKB_00480at 493.893 kb on - strand, within OHPLBJKB_00480at 493.893 kb on - strand, within OHPLBJKB_00480at 493.893 kb on - strand, within OHPLBJKB_00480at 494.062 kb on + strand, within OHPLBJKB_00480at 494.063 kb on - strand, within OHPLBJKB_00480at 494.144 kb on - strand, within OHPLBJKB_00480at 494.144 kb on - strand, within OHPLBJKB_00480at 494.169 kb on - strand, within OHPLBJKB_00480at 494.202 kb on + strand, within OHPLBJKB_00480at 494.203 kb on - strand, within OHPLBJKB_00480at 494.203 kb on - strand, within OHPLBJKB_00480at 494.203 kb on - strand, within OHPLBJKB_00480at 494.216 kb on + strand, within OHPLBJKB_00480at 494.216 kb on + strand, within OHPLBJKB_00480at 494.294 kb on - strand, within OHPLBJKB_00480at 494.294 kb on - strand, within OHPLBJKB_00480at 494.294 kb on - strand, within OHPLBJKB_00480at 494.358 kb on + strand, within OHPLBJKB_00480at 494.362 kb on + strand, within OHPLBJKB_00480at 494.362 kb on + strand, within OHPLBJKB_00480at 494.363 kb on - strand, within OHPLBJKB_00480at 494.363 kb on - strand, within OHPLBJKB_00480at 494.454 kb on + strand, within OHPLBJKB_00480at 494.487 kb on - strand, within OHPLBJKB_00480at 494.516 kb on - strand, within OHPLBJKB_00480at 494.517 kb on + strand, within OHPLBJKB_00480at 494.518 kb on - strand, within OHPLBJKB_00480at 494.518 kb on - strand, within OHPLBJKB_00480at 494.565 kb on - strandat 494.565 kb on - strandat 494.565 kb on - strandat 494.565 kb on - strandat 494.576 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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491,870 + OHPLBJKB_00477 0.80 -0.3
491,870 + OHPLBJKB_00477 0.80 +0.6
491,870 + OHPLBJKB_00477 0.80 -0.2
491,870 + OHPLBJKB_00477 0.80 -0.0
491,870 + OHPLBJKB_00477 0.80 -1.0
491,870 + OHPLBJKB_00477 0.80 -0.9
491,871 - OHPLBJKB_00477 0.80 -0.6
491,871 - OHPLBJKB_00477 0.80 -0.1
491,871 - OHPLBJKB_00477 0.80 -0.4
491,871 - OHPLBJKB_00477 0.80 -0.2
491,871 - OHPLBJKB_00477 0.80 -0.1
491,871 - OHPLBJKB_00477 0.80 +1.1
491,871 - OHPLBJKB_00477 0.80 -1.5
491,871 - OHPLBJKB_00477 0.80 -0.5
491,871 - OHPLBJKB_00477 0.80 -0.2
491,871 - OHPLBJKB_00477 0.80 +0.0
491,871 - OHPLBJKB_00477 0.80 +0.5
491,871 - OHPLBJKB_00477 0.80 -0.2
491,871 - OHPLBJKB_00477 0.80 +0.3
491,984 - -0.0
492,011 - +0.6
492,030 + -2.0
492,030 + -0.9
492,054 + -0.2
492,083 + -0.5
492,083 + -0.3
492,083 + +0.6
492,083 + +0.0
492,083 + +1.4
492,084 - -0.1
492,084 - -0.5
492,084 - +0.2
492,084 - +0.1
492,084 - +0.1
492,099 + -0.9
492,099 + +0.5
492,102 + +1.7
492,102 + -0.6
492,259 + OHPLBJKB_00478 0.42 -0.6
492,260 - OHPLBJKB_00478 0.43 +0.1
492,260 - OHPLBJKB_00478 0.43 +0.4
492,260 - OHPLBJKB_00478 0.43 -1.3
492,277 + OHPLBJKB_00478 0.48 -0.2
492,303 + OHPLBJKB_00478 0.56 -0.8
492,407 + OHPLBJKB_00478 0.88 -0.8
492,414 + -0.7
492,426 + +0.4
492,428 + +0.4
492,429 - -0.4
492,429 - +0.5
492,429 - -0.6
492,429 - -0.3
492,429 - -0.6
492,432 + +0.5
492,526 - +0.7
492,526 - -0.4
492,526 - -0.2
492,622 - +0.8
492,646 + -0.1
492,647 - +0.1
492,652 + -1.0
492,681 + +0.1
492,719 + +0.7
492,801 + -0.7
492,802 - -0.8
492,816 + +0.2
492,817 - -0.4
492,985 + OHPLBJKB_00479 0.21 +0.2
492,985 + OHPLBJKB_00479 0.21 -1.2
493,081 + OHPLBJKB_00479 0.33 -1.0
493,082 - OHPLBJKB_00479 0.33 -1.4
493,082 - OHPLBJKB_00479 0.33 -1.2
493,127 + OHPLBJKB_00479 0.39 -0.8
493,128 - OHPLBJKB_00479 0.39 -1.8
493,201 + OHPLBJKB_00479 0.48 +1.0
493,201 + OHPLBJKB_00479 0.48 -1.0
493,201 + OHPLBJKB_00479 0.48 -1.0
493,201 + OHPLBJKB_00479 0.48 -0.7
493,201 + OHPLBJKB_00479 0.48 -1.2
493,202 - OHPLBJKB_00479 0.48 -0.2
493,202 - OHPLBJKB_00479 0.48 +0.3
493,202 - OHPLBJKB_00479 0.48 +0.1
493,202 - OHPLBJKB_00479 0.48 -2.8
493,202 - OHPLBJKB_00479 0.48 +0.0
493,202 - OHPLBJKB_00479 0.48 -2.0
493,571 + +0.8
493,572 - -0.1
493,611 + +0.1
493,611 + +0.7
493,612 - -0.7
493,641 - +0.7
493,642 + -0.3
493,642 + +0.2
493,642 + +0.6
493,642 + +1.1
493,643 - +0.5
493,643 - +0.5
493,643 - +0.5
493,643 - -0.2
493,654 - +1.4
493,654 - -0.2
493,667 + -1.1
493,667 + +0.1
493,668 - -0.6
493,668 - -1.4
493,668 - +0.9
493,734 + -0.1
493,734 + -1.1
493,735 - -2.0
493,860 - OHPLBJKB_00480 0.14 +1.3
493,861 + OHPLBJKB_00480 0.14 +0.6
493,861 + OHPLBJKB_00480 0.14 +0.1
493,861 + OHPLBJKB_00480 0.14 -0.6
493,861 + OHPLBJKB_00480 0.14 +0.8
493,861 + OHPLBJKB_00480 0.14 -0.2
493,862 - OHPLBJKB_00480 0.14 +1.1
493,862 - OHPLBJKB_00480 0.14 +0.7
493,862 - OHPLBJKB_00480 0.14 -0.0
493,892 + OHPLBJKB_00480 0.18 +0.4
493,892 + OHPLBJKB_00480 0.18 -0.8
493,892 + OHPLBJKB_00480 0.18 -0.1
493,893 - OHPLBJKB_00480 0.18 -1.2
493,893 - OHPLBJKB_00480 0.18 +0.8
493,893 - OHPLBJKB_00480 0.18 +0.7
493,893 - OHPLBJKB_00480 0.18 +0.0
494,062 + OHPLBJKB_00480 0.37 -0.8
494,063 - OHPLBJKB_00480 0.37 -0.0
494,144 - OHPLBJKB_00480 0.46 +0.3
494,144 - OHPLBJKB_00480 0.46 +0.2
494,169 - OHPLBJKB_00480 0.49 -1.2
494,202 + OHPLBJKB_00480 0.52 -1.4
494,203 - OHPLBJKB_00480 0.52 -0.3
494,203 - OHPLBJKB_00480 0.52 +1.8
494,203 - OHPLBJKB_00480 0.52 +0.2
494,216 + OHPLBJKB_00480 0.54 -1.5
494,216 + OHPLBJKB_00480 0.54 +1.0
494,294 - OHPLBJKB_00480 0.63 +0.7
494,294 - OHPLBJKB_00480 0.63 +0.1
494,294 - OHPLBJKB_00480 0.63 -1.0
494,358 + OHPLBJKB_00480 0.70 +0.6
494,362 + OHPLBJKB_00480 0.70 +0.6
494,362 + OHPLBJKB_00480 0.70 +0.3
494,363 - OHPLBJKB_00480 0.70 +0.9
494,363 - OHPLBJKB_00480 0.70 -0.7
494,454 + OHPLBJKB_00480 0.80 -0.0
494,487 - OHPLBJKB_00480 0.84 -0.9
494,516 - OHPLBJKB_00480 0.87 +0.1
494,517 + OHPLBJKB_00480 0.87 -1.1
494,518 - OHPLBJKB_00480 0.88 -1.3
494,518 - OHPLBJKB_00480 0.88 +0.8
494,565 - -0.3
494,565 - +0.9
494,565 - -0.9
494,565 - -0.0
494,576 - -1.8

Or see this region's nucleotide sequence