Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00298

Experiment: Control_HSF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_00296 and OHPLBJKB_00297 are separated by 96 nucleotidesOHPLBJKB_00297 and OHPLBJKB_00298 are separated by 227 nucleotidesOHPLBJKB_00298 and OHPLBJKB_00299 overlap by 4 nucleotides OHPLBJKB_00296: OHPLBJKB_00296 - Protein YhgF, at 326,836 to 329,157 _00296 OHPLBJKB_00297: OHPLBJKB_00297 - Transcription elongation factor GreB, at 329,254 to 329,730 _00297 OHPLBJKB_00298: OHPLBJKB_00298 - Transcriptional regulatory protein OmpR, at 329,958 to 330,677 _00298 OHPLBJKB_00299: OHPLBJKB_00299 - Osmolarity sensor protein EnvZ, at 330,674 to 332,026 _00299 Position (kb) 329 330 331Strain fitness (log2 ratio) -2 -1 0 1 2at 328.973 kb on + strandat 328.973 kb on + strandat 329.040 kb on - strandat 329.061 kb on + strandat 329.130 kb on + strandat 329.131 kb on - strandat 329.195 kb on + strandat 329.195 kb on + strandat 329.196 kb on - strandat 329.196 kb on - strandat 329.199 kb on + strandat 329.199 kb on + strandat 329.199 kb on + strandat 329.242 kb on + strandat 329.280 kb on + strandat 329.280 kb on + strandat 329.281 kb on - strandat 329.285 kb on + strandat 329.285 kb on + strandat 329.286 kb on - strandat 329.381 kb on + strand, within OHPLBJKB_00297at 329.381 kb on + strand, within OHPLBJKB_00297at 329.381 kb on + strand, within OHPLBJKB_00297at 329.381 kb on + strand, within OHPLBJKB_00297at 329.382 kb on - strand, within OHPLBJKB_00297at 329.382 kb on - strand, within OHPLBJKB_00297at 329.382 kb on - strand, within OHPLBJKB_00297at 329.577 kb on + strand, within OHPLBJKB_00297at 329.578 kb on - strand, within OHPLBJKB_00297at 329.580 kb on + strand, within OHPLBJKB_00297at 329.581 kb on - strand, within OHPLBJKB_00297at 329.581 kb on - strand, within OHPLBJKB_00297at 329.582 kb on + strand, within OHPLBJKB_00297at 329.582 kb on + strand, within OHPLBJKB_00297at 329.582 kb on + strand, within OHPLBJKB_00297at 329.582 kb on + strand, within OHPLBJKB_00297at 329.583 kb on - strand, within OHPLBJKB_00297at 329.583 kb on - strand, within OHPLBJKB_00297at 329.583 kb on - strand, within OHPLBJKB_00297at 329.583 kb on - strand, within OHPLBJKB_00297at 329.589 kb on - strand, within OHPLBJKB_00297at 329.672 kb on + strand, within OHPLBJKB_00297at 329.672 kb on + strand, within OHPLBJKB_00297at 329.672 kb on + strand, within OHPLBJKB_00297at 329.673 kb on - strand, within OHPLBJKB_00297at 329.673 kb on - strand, within OHPLBJKB_00297at 329.673 kb on - strand, within OHPLBJKB_00297at 329.677 kb on - strand, within OHPLBJKB_00297at 329.774 kb on - strandat 329.774 kb on - strandat 329.786 kb on + strandat 329.787 kb on - strandat 329.825 kb on + strandat 329.826 kb on - strandat 329.829 kb on + strandat 329.829 kb on + strandat 329.830 kb on - strandat 329.830 kb on - strandat 329.842 kb on - strandat 329.861 kb on + strandat 329.884 kb on + strandat 329.884 kb on + strandat 329.885 kb on - strandat 329.885 kb on - strandat 329.924 kb on + strandat 329.924 kb on + strandat 329.925 kb on - strandat 329.950 kb on + strandat 329.951 kb on - strandat 329.970 kb on + strandat 329.971 kb on - strandat 329.971 kb on - strandat 330.024 kb on + strandat 330.025 kb on - strandat 330.110 kb on + strand, within OHPLBJKB_00298at 330.110 kb on + strand, within OHPLBJKB_00298at 330.111 kb on - strand, within OHPLBJKB_00298at 330.111 kb on - strand, within OHPLBJKB_00298at 330.124 kb on + strand, within OHPLBJKB_00298at 330.125 kb on - strand, within OHPLBJKB_00298at 330.131 kb on - strand, within OHPLBJKB_00298at 330.131 kb on - strand, within OHPLBJKB_00298at 330.197 kb on + strand, within OHPLBJKB_00298at 330.198 kb on - strand, within OHPLBJKB_00298at 330.198 kb on - strand, within OHPLBJKB_00298at 330.235 kb on + strand, within OHPLBJKB_00298at 330.236 kb on - strand, within OHPLBJKB_00298at 330.262 kb on - strand, within OHPLBJKB_00298at 330.392 kb on + strand, within OHPLBJKB_00298at 330.393 kb on - strand, within OHPLBJKB_00298at 330.618 kb on + strandat 330.618 kb on + strandat 330.618 kb on + strandat 330.619 kb on - strandat 330.646 kb on - strandat 330.669 kb on - strandat 330.715 kb on + strandat 330.720 kb on + strandat 330.764 kb on + strandat 330.764 kb on + strandat 330.765 kb on - strandat 330.838 kb on + strand, within OHPLBJKB_00299at 330.838 kb on + strand, within OHPLBJKB_00299at 330.838 kb on + strand, within OHPLBJKB_00299at 330.838 kb on + strand, within OHPLBJKB_00299at 330.839 kb on - strand, within OHPLBJKB_00299at 330.986 kb on + strand, within OHPLBJKB_00299at 331.162 kb on + strand, within OHPLBJKB_00299at 331.163 kb on - strand, within OHPLBJKB_00299at 331.163 kb on - strand, within OHPLBJKB_00299at 331.207 kb on + strand, within OHPLBJKB_00299at 331.207 kb on + strand, within OHPLBJKB_00299at 331.264 kb on + strand, within OHPLBJKB_00299at 331.265 kb on - strand, within OHPLBJKB_00299at 331.339 kb on + strand, within OHPLBJKB_00299at 331.427 kb on - strand, within OHPLBJKB_00299at 331.487 kb on - strand, within OHPLBJKB_00299at 331.532 kb on + strand, within OHPLBJKB_00299at 331.532 kb on + strand, within OHPLBJKB_00299at 331.533 kb on - strand, within OHPLBJKB_00299at 331.576 kb on + strand, within OHPLBJKB_00299at 331.577 kb on - strand, within OHPLBJKB_00299at 331.585 kb on - strand, within OHPLBJKB_00299at 331.585 kb on - strand, within OHPLBJKB_00299at 331.585 kb on - strand, within OHPLBJKB_00299

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
remove
328,973 + +0.1
328,973 + -0.1
329,040 - -0.5
329,061 + +0.1
329,130 + +0.3
329,131 - +0.2
329,195 + +0.1
329,195 + -0.6
329,196 - +0.7
329,196 - -0.1
329,199 + +0.1
329,199 + -1.6
329,199 + -0.1
329,242 + +0.4
329,280 + +0.2
329,280 + +0.5
329,281 - -0.8
329,285 + +1.0
329,285 + +0.2
329,286 - -0.1
329,381 + OHPLBJKB_00297 0.27 -0.3
329,381 + OHPLBJKB_00297 0.27 -0.9
329,381 + OHPLBJKB_00297 0.27 +0.3
329,381 + OHPLBJKB_00297 0.27 +0.5
329,382 - OHPLBJKB_00297 0.27 -0.2
329,382 - OHPLBJKB_00297 0.27 +0.7
329,382 - OHPLBJKB_00297 0.27 -0.8
329,577 + OHPLBJKB_00297 0.68 +0.1
329,578 - OHPLBJKB_00297 0.68 -0.4
329,580 + OHPLBJKB_00297 0.68 +0.3
329,581 - OHPLBJKB_00297 0.69 -0.0
329,581 - OHPLBJKB_00297 0.69 -0.0
329,582 + OHPLBJKB_00297 0.69 -0.1
329,582 + OHPLBJKB_00297 0.69 +0.4
329,582 + OHPLBJKB_00297 0.69 -0.5
329,582 + OHPLBJKB_00297 0.69 -0.1
329,583 - OHPLBJKB_00297 0.69 -1.3
329,583 - OHPLBJKB_00297 0.69 +0.8
329,583 - OHPLBJKB_00297 0.69 -0.1
329,583 - OHPLBJKB_00297 0.69 -0.6
329,589 - OHPLBJKB_00297 0.70 +0.8
329,672 + OHPLBJKB_00297 0.88 +0.7
329,672 + OHPLBJKB_00297 0.88 -0.4
329,672 + OHPLBJKB_00297 0.88 +0.0
329,673 - OHPLBJKB_00297 0.88 -0.3
329,673 - OHPLBJKB_00297 0.88 -1.1
329,673 - OHPLBJKB_00297 0.88 -0.9
329,677 - OHPLBJKB_00297 0.89 +0.1
329,774 - +0.2
329,774 - +0.3
329,786 + +0.8
329,787 - +0.4
329,825 + +0.4
329,826 - -1.4
329,829 + +0.9
329,829 + -0.3
329,830 - +0.3
329,830 - +0.4
329,842 - -0.6
329,861 + -0.5
329,884 + -0.5
329,884 + -0.1
329,885 - +0.1
329,885 - +0.3
329,924 + +1.2
329,924 + -0.2
329,925 - +0.4
329,950 + +0.3
329,951 - -0.6
329,970 + -0.1
329,971 - +0.1
329,971 - -0.4
330,024 + +0.0
330,025 - -0.1
330,110 + OHPLBJKB_00298 0.21 -0.9
330,110 + OHPLBJKB_00298 0.21 -0.1
330,111 - OHPLBJKB_00298 0.21 -1.9
330,111 - OHPLBJKB_00298 0.21 -0.1
330,124 + OHPLBJKB_00298 0.23 -0.9
330,125 - OHPLBJKB_00298 0.23 -1.0
330,131 - OHPLBJKB_00298 0.24 +0.1
330,131 - OHPLBJKB_00298 0.24 -0.1
330,197 + OHPLBJKB_00298 0.33 -2.1
330,198 - OHPLBJKB_00298 0.33 -0.7
330,198 - OHPLBJKB_00298 0.33 -0.7
330,235 + OHPLBJKB_00298 0.38 -2.4
330,236 - OHPLBJKB_00298 0.39 -0.4
330,262 - OHPLBJKB_00298 0.42 -0.3
330,392 + OHPLBJKB_00298 0.60 -0.9
330,393 - OHPLBJKB_00298 0.60 +1.9
330,618 + -0.6
330,618 + -0.1
330,618 + +0.4
330,619 - -1.4
330,646 - +1.0
330,669 - +1.0
330,715 + -1.6
330,720 + -0.0
330,764 + -1.6
330,764 + -0.1
330,765 - +1.3
330,838 + OHPLBJKB_00299 0.12 -0.7
330,838 + OHPLBJKB_00299 0.12 -1.6
330,838 + OHPLBJKB_00299 0.12 -1.4
330,838 + OHPLBJKB_00299 0.12 +0.1
330,839 - OHPLBJKB_00299 0.12 -0.7
330,986 + OHPLBJKB_00299 0.23 +1.4
331,162 + OHPLBJKB_00299 0.36 -1.6
331,163 - OHPLBJKB_00299 0.36 -0.1
331,163 - OHPLBJKB_00299 0.36 -0.7
331,207 + OHPLBJKB_00299 0.39 -0.8
331,207 + OHPLBJKB_00299 0.39 +0.6
331,264 + OHPLBJKB_00299 0.44 +0.1
331,265 - OHPLBJKB_00299 0.44 -0.6
331,339 + OHPLBJKB_00299 0.49 +1.4
331,427 - OHPLBJKB_00299 0.56 -1.1
331,487 - OHPLBJKB_00299 0.60 -1.1
331,532 + OHPLBJKB_00299 0.63 -0.4
331,532 + OHPLBJKB_00299 0.63 +0.6
331,533 - OHPLBJKB_00299 0.63 -0.7
331,576 + OHPLBJKB_00299 0.67 +0.4
331,577 - OHPLBJKB_00299 0.67 -1.4
331,585 - OHPLBJKB_00299 0.67 +0.1
331,585 - OHPLBJKB_00299 0.67 -0.4
331,585 - OHPLBJKB_00299 0.67 -1.8

Or see this region's nucleotide sequence