Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00161

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00160 and OHPLBJKB_00161 are separated by 91 nucleotidesOHPLBJKB_00161 and OHPLBJKB_00162 are separated by 742 nucleotides OHPLBJKB_00160: OHPLBJKB_00160 - 'Kdo(2)-lipid A phosphoethanolamine 7''-transferase' transl_table=11, at 171,123 to 172,814 _00160 OHPLBJKB_00161: OHPLBJKB_00161 - tRNA-Pro, at 172,906 to 172,982 _00161 OHPLBJKB_00162: OHPLBJKB_00162 - Periplasmic dipeptide transport protein, at 173,725 to 175,332 _00162 Position (kb) 172 173Strain fitness (log2 ratio) -2 -1 0 1 2at 171.932 kb on + strand, within OHPLBJKB_00160at 171.932 kb on + strand, within OHPLBJKB_00160at 171.933 kb on - strand, within OHPLBJKB_00160at 171.936 kb on - strand, within OHPLBJKB_00160at 171.995 kb on + strand, within OHPLBJKB_00160at 172.030 kb on + strand, within OHPLBJKB_00160at 172.030 kb on + strand, within OHPLBJKB_00160at 172.030 kb on + strand, within OHPLBJKB_00160at 172.030 kb on + strand, within OHPLBJKB_00160at 172.030 kb on + strand, within OHPLBJKB_00160at 172.031 kb on - strand, within OHPLBJKB_00160at 172.052 kb on + strand, within OHPLBJKB_00160at 172.105 kb on + strand, within OHPLBJKB_00160at 172.105 kb on + strand, within OHPLBJKB_00160at 172.106 kb on - strand, within OHPLBJKB_00160at 172.106 kb on - strand, within OHPLBJKB_00160at 172.126 kb on - strand, within OHPLBJKB_00160at 172.126 kb on - strand, within OHPLBJKB_00160at 172.126 kb on - strand, within OHPLBJKB_00160at 172.152 kb on + strand, within OHPLBJKB_00160at 172.235 kb on + strand, within OHPLBJKB_00160at 172.235 kb on + strand, within OHPLBJKB_00160at 172.235 kb on + strand, within OHPLBJKB_00160at 172.236 kb on - strand, within OHPLBJKB_00160at 172.236 kb on - strand, within OHPLBJKB_00160at 172.286 kb on + strand, within OHPLBJKB_00160at 172.286 kb on + strand, within OHPLBJKB_00160at 172.287 kb on - strand, within OHPLBJKB_00160at 172.307 kb on + strand, within OHPLBJKB_00160at 172.326 kb on - strand, within OHPLBJKB_00160at 172.329 kb on + strand, within OHPLBJKB_00160at 172.330 kb on - strand, within OHPLBJKB_00160at 172.330 kb on - strand, within OHPLBJKB_00160at 172.349 kb on + strand, within OHPLBJKB_00160at 172.350 kb on - strand, within OHPLBJKB_00160at 172.376 kb on + strand, within OHPLBJKB_00160at 172.376 kb on + strand, within OHPLBJKB_00160at 172.377 kb on - strand, within OHPLBJKB_00160at 172.397 kb on + strand, within OHPLBJKB_00160at 172.398 kb on - strand, within OHPLBJKB_00160at 172.422 kb on + strand, within OHPLBJKB_00160at 172.423 kb on - strand, within OHPLBJKB_00160at 172.440 kb on + strand, within OHPLBJKB_00160at 172.440 kb on + strand, within OHPLBJKB_00160at 172.440 kb on + strand, within OHPLBJKB_00160at 172.440 kb on + strand, within OHPLBJKB_00160at 172.440 kb on + strand, within OHPLBJKB_00160at 172.440 kb on + strand, within OHPLBJKB_00160at 172.440 kb on + strand, within OHPLBJKB_00160at 172.441 kb on - strand, within OHPLBJKB_00160at 172.441 kb on - strand, within OHPLBJKB_00160at 172.441 kb on - strand, within OHPLBJKB_00160at 172.441 kb on - strand, within OHPLBJKB_00160at 172.454 kb on + strand, within OHPLBJKB_00160at 172.455 kb on - strand, within OHPLBJKB_00160at 172.455 kb on - strand, within OHPLBJKB_00160at 172.455 kb on - strand, within OHPLBJKB_00160at 172.504 kb on - strand, within OHPLBJKB_00160at 172.529 kb on + strand, within OHPLBJKB_00160at 172.529 kb on + strand, within OHPLBJKB_00160at 172.529 kb on + strand, within OHPLBJKB_00160at 172.616 kb on + strand, within OHPLBJKB_00160at 172.620 kb on + strand, within OHPLBJKB_00160at 172.620 kb on + strand, within OHPLBJKB_00160at 172.621 kb on - strand, within OHPLBJKB_00160at 172.621 kb on - strand, within OHPLBJKB_00160at 172.621 kb on - strand, within OHPLBJKB_00160at 172.621 kb on - strand, within OHPLBJKB_00160at 172.699 kb on + strandat 172.707 kb on + strandat 172.708 kb on - strandat 172.708 kb on - strandat 172.708 kb on - strandat 172.708 kb on - strandat 172.713 kb on - strandat 172.734 kb on + strandat 172.735 kb on - strandat 172.736 kb on + strandat 172.736 kb on + strandat 172.736 kb on + strandat 172.737 kb on - strandat 172.737 kb on - strandat 172.737 kb on - strandat 172.813 kb on - strandat 172.813 kb on - strandat 172.971 kb on + strand, within OHPLBJKB_00161at 173.193 kb on + strandat 173.193 kb on + strandat 173.193 kb on + strandat 173.194 kb on - strandat 173.244 kb on + strandat 173.273 kb on + strandat 173.322 kb on + strandat 173.322 kb on + strandat 173.334 kb on + strandat 173.395 kb on + strandat 173.400 kb on - strandat 173.454 kb on + strandat 173.455 kb on - strandat 173.505 kb on + strandat 173.505 kb on + strandat 173.505 kb on + strandat 173.523 kb on - strandat 173.629 kb on - strandat 173.724 kb on - strandat 173.731 kb on - strandat 173.731 kb on - strandat 173.781 kb on + strandat 173.809 kb on - strandat 173.821 kb on + strandat 173.821 kb on + strandat 173.882 kb on - strandat 173.882 kb on - strandat 173.882 kb on - strandat 173.882 kb on - strandat 173.882 kb on - strandat 173.882 kb on - strandat 173.905 kb on + strand, within OHPLBJKB_00162at 173.905 kb on + strand, within OHPLBJKB_00162at 173.906 kb on - strand, within OHPLBJKB_00162at 173.906 kb on - strand, within OHPLBJKB_00162at 173.906 kb on - strand, within OHPLBJKB_00162

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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171,932 + OHPLBJKB_00160 0.48 -0.1
171,932 + OHPLBJKB_00160 0.48 +0.3
171,933 - OHPLBJKB_00160 0.48 -0.1
171,936 - OHPLBJKB_00160 0.48 -0.8
171,995 + OHPLBJKB_00160 0.52 -0.4
172,030 + OHPLBJKB_00160 0.54 -0.4
172,030 + OHPLBJKB_00160 0.54 -0.8
172,030 + OHPLBJKB_00160 0.54 +0.2
172,030 + OHPLBJKB_00160 0.54 -0.6
172,030 + OHPLBJKB_00160 0.54 +0.1
172,031 - OHPLBJKB_00160 0.54 +0.3
172,052 + OHPLBJKB_00160 0.55 +0.0
172,105 + OHPLBJKB_00160 0.58 -2.3
172,105 + OHPLBJKB_00160 0.58 -0.2
172,106 - OHPLBJKB_00160 0.58 -1.2
172,106 - OHPLBJKB_00160 0.58 +1.0
172,126 - OHPLBJKB_00160 0.59 -0.9
172,126 - OHPLBJKB_00160 0.59 +0.0
172,126 - OHPLBJKB_00160 0.59 +0.0
172,152 + OHPLBJKB_00160 0.61 -1.3
172,235 + OHPLBJKB_00160 0.66 +0.3
172,235 + OHPLBJKB_00160 0.66 +1.1
172,235 + OHPLBJKB_00160 0.66 -1.0
172,236 - OHPLBJKB_00160 0.66 +0.0
172,236 - OHPLBJKB_00160 0.66 -0.1
172,286 + OHPLBJKB_00160 0.69 -1.7
172,286 + OHPLBJKB_00160 0.69 -0.0
172,287 - OHPLBJKB_00160 0.69 +1.3
172,307 + OHPLBJKB_00160 0.70 +1.5
172,326 - OHPLBJKB_00160 0.71 -0.6
172,329 + OHPLBJKB_00160 0.71 -0.3
172,330 - OHPLBJKB_00160 0.71 +0.0
172,330 - OHPLBJKB_00160 0.71 -1.2
172,349 + OHPLBJKB_00160 0.72 -0.4
172,350 - OHPLBJKB_00160 0.73 -0.6
172,376 + OHPLBJKB_00160 0.74 +0.5
172,376 + OHPLBJKB_00160 0.74 +0.4
172,377 - OHPLBJKB_00160 0.74 +0.2
172,397 + OHPLBJKB_00160 0.75 -0.3
172,398 - OHPLBJKB_00160 0.75 -2.4
172,422 + OHPLBJKB_00160 0.77 -0.7
172,423 - OHPLBJKB_00160 0.77 -0.6
172,440 + OHPLBJKB_00160 0.78 -0.8
172,440 + OHPLBJKB_00160 0.78 -0.3
172,440 + OHPLBJKB_00160 0.78 -0.8
172,440 + OHPLBJKB_00160 0.78 +1.2
172,440 + OHPLBJKB_00160 0.78 +0.5
172,440 + OHPLBJKB_00160 0.78 +0.2
172,440 + OHPLBJKB_00160 0.78 +0.1
172,441 - OHPLBJKB_00160 0.78 +0.9
172,441 - OHPLBJKB_00160 0.78 +0.1
172,441 - OHPLBJKB_00160 0.78 +0.0
172,441 - OHPLBJKB_00160 0.78 -0.3
172,454 + OHPLBJKB_00160 0.79 +0.3
172,455 - OHPLBJKB_00160 0.79 -0.3
172,455 - OHPLBJKB_00160 0.79 -0.5
172,455 - OHPLBJKB_00160 0.79 -0.2
172,504 - OHPLBJKB_00160 0.82 -0.9
172,529 + OHPLBJKB_00160 0.83 -0.4
172,529 + OHPLBJKB_00160 0.83 -2.1
172,529 + OHPLBJKB_00160 0.83 +0.2
172,616 + OHPLBJKB_00160 0.88 -0.8
172,620 + OHPLBJKB_00160 0.88 +0.5
172,620 + OHPLBJKB_00160 0.88 -0.7
172,621 - OHPLBJKB_00160 0.89 -0.7
172,621 - OHPLBJKB_00160 0.89 -0.6
172,621 - OHPLBJKB_00160 0.89 -0.8
172,621 - OHPLBJKB_00160 0.89 -1.4
172,699 + -0.2
172,707 + -0.2
172,708 - +0.4
172,708 - -1.9
172,708 - -1.2
172,708 - +0.4
172,713 - -0.1
172,734 + -1.3
172,735 - -0.1
172,736 + -0.1
172,736 + +0.2
172,736 + +1.7
172,737 - +0.2
172,737 - +0.2
172,737 - +0.5
172,813 - +1.0
172,813 - -0.5
172,971 + OHPLBJKB_00161 0.84 -0.6
173,193 + +0.5
173,193 + -0.3
173,193 + -1.3
173,194 - +0.1
173,244 + -0.2
173,273 + -0.8
173,322 + -1.4
173,322 + +0.4
173,334 + -0.6
173,395 + +0.7
173,400 - -1.1
173,454 + +0.2
173,455 - +0.5
173,505 + +1.5
173,505 + +0.1
173,505 + +1.2
173,523 - -0.6
173,629 - -0.4
173,724 - +0.8
173,731 - +0.6
173,731 - -1.0
173,781 + +0.0
173,809 - -1.3
173,821 + -0.6
173,821 + +0.3
173,882 - +0.7
173,882 - -0.3
173,882 - +0.2
173,882 - +0.3
173,882 - +0.4
173,882 - -0.4
173,905 + OHPLBJKB_00162 0.11 +0.5
173,905 + OHPLBJKB_00162 0.11 -0.0
173,906 - OHPLBJKB_00162 0.11 +2.2
173,906 - OHPLBJKB_00162 0.11 +0.5
173,906 - OHPLBJKB_00162 0.11 +1.3

Or see this region's nucleotide sequence