Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00089

Experiment: Control_HSF

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00087 and OHPLBJKB_00088 are separated by 244 nucleotidesOHPLBJKB_00088 and OHPLBJKB_00089 are separated by 141 nucleotidesOHPLBJKB_00089 and OHPLBJKB_00090 are separated by 62 nucleotidesOHPLBJKB_00090 and OHPLBJKB_00091 overlap by 1 nucleotides OHPLBJKB_00087: OHPLBJKB_00087 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 91,320 to 92,864 _00087 OHPLBJKB_00088: OHPLBJKB_00088 - putative protein YibN, at 93,109 to 93,540 _00088 OHPLBJKB_00089: OHPLBJKB_00089 - Glutaredoxin 3, at 93,682 to 93,933 _00089 OHPLBJKB_00090: OHPLBJKB_00090 - Protein-export protein SecB, at 93,996 to 94,463 _00090 OHPLBJKB_00091: OHPLBJKB_00091 - Glycerol-3-phosphate dehydrogenase [NAD(P)+], at 94,463 to 95,482 _00091 Position (kb) 93 94Strain fitness (log2 ratio) -2 -1 0 1 2at 92.774 kb on + strandat 92.774 kb on + strandat 92.775 kb on - strandat 92.819 kb on - strandat 92.844 kb on - strandat 92.844 kb on - strandat 92.844 kb on - strandat 92.948 kb on - strandat 92.950 kb on - strandat 93.023 kb on + strandat 93.023 kb on + strandat 93.023 kb on + strandat 93.038 kb on - strandat 93.057 kb on + strandat 93.058 kb on - strandat 93.058 kb on - strandat 93.058 kb on - strandat 93.059 kb on + strandat 93.060 kb on - strandat 93.060 kb on - strandat 93.060 kb on - strandat 93.060 kb on - strandat 93.079 kb on + strandat 93.086 kb on + strandat 93.087 kb on - strandat 93.087 kb on - strandat 93.121 kb on - strandat 93.121 kb on - strandat 93.146 kb on + strandat 93.192 kb on + strand, within OHPLBJKB_00088at 93.192 kb on + strand, within OHPLBJKB_00088at 93.192 kb on + strand, within OHPLBJKB_00088at 93.193 kb on - strand, within OHPLBJKB_00088at 93.199 kb on - strand, within OHPLBJKB_00088at 93.244 kb on - strand, within OHPLBJKB_00088at 93.244 kb on - strand, within OHPLBJKB_00088at 93.285 kb on - strand, within OHPLBJKB_00088at 93.327 kb on + strand, within OHPLBJKB_00088at 93.327 kb on + strand, within OHPLBJKB_00088at 93.327 kb on + strand, within OHPLBJKB_00088at 93.328 kb on - strand, within OHPLBJKB_00088at 93.328 kb on - strand, within OHPLBJKB_00088at 93.328 kb on - strand, within OHPLBJKB_00088at 93.328 kb on - strand, within OHPLBJKB_00088at 93.328 kb on - strand, within OHPLBJKB_00088at 93.328 kb on - strand, within OHPLBJKB_00088at 93.328 kb on - strand, within OHPLBJKB_00088at 93.328 kb on - strand, within OHPLBJKB_00088at 93.328 kb on - strand, within OHPLBJKB_00088at 93.328 kb on - strand, within OHPLBJKB_00088at 93.473 kb on + strand, within OHPLBJKB_00088at 93.474 kb on - strand, within OHPLBJKB_00088at 93.474 kb on - strand, within OHPLBJKB_00088at 93.474 kb on - strand, within OHPLBJKB_00088at 93.538 kb on + strandat 93.539 kb on - strandat 93.539 kb on - strandat 93.543 kb on + strandat 93.544 kb on - strandat 93.582 kb on + strandat 93.582 kb on + strandat 93.598 kb on + strandat 93.598 kb on + strandat 93.598 kb on + strandat 93.598 kb on + strandat 93.598 kb on + strandat 93.599 kb on - strandat 93.599 kb on - strandat 93.599 kb on - strandat 93.599 kb on - strandat 93.599 kb on - strandat 93.599 kb on - strandat 93.599 kb on - strandat 93.599 kb on - strandat 93.599 kb on - strandat 93.599 kb on - strandat 93.604 kb on + strandat 93.604 kb on + strandat 93.604 kb on + strandat 93.605 kb on - strandat 93.606 kb on + strandat 93.606 kb on + strandat 93.606 kb on + strandat 93.606 kb on + strandat 93.606 kb on + strandat 93.676 kb on + strandat 93.676 kb on + strandat 93.676 kb on + strandat 93.681 kb on + strandat 93.700 kb on + strandat 93.700 kb on + strandat 93.889 kb on + strand, within OHPLBJKB_00089at 93.889 kb on + strand, within OHPLBJKB_00089at 93.889 kb on + strand, within OHPLBJKB_00089at 93.931 kb on + strandat 93.931 kb on + strandat 93.951 kb on + strandat 93.951 kb on + strandat 93.951 kb on + strandat 93.951 kb on + strandat 93.963 kb on + strandat 93.963 kb on + strandat 93.963 kb on + strandat 93.967 kb on + strandat 93.967 kb on + strandat 93.980 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
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92,774 + -0.2
92,774 + -1.3
92,775 - +0.6
92,819 - -0.5
92,844 - -0.0
92,844 - +0.6
92,844 - +0.7
92,948 - +0.7
92,950 - -0.4
93,023 + +0.5
93,023 + +0.3
93,023 + -0.0
93,038 - +1.0
93,057 + -0.9
93,058 - +0.4
93,058 - -0.3
93,058 - -0.8
93,059 + +0.0
93,060 - -0.5
93,060 - -0.6
93,060 - -0.8
93,060 - -0.1
93,079 + -0.5
93,086 + -0.2
93,087 - -0.9
93,087 - -0.4
93,121 - -0.7
93,121 - +0.2
93,146 + +0.7
93,192 + OHPLBJKB_00088 0.19 -0.2
93,192 + OHPLBJKB_00088 0.19 -0.9
93,192 + OHPLBJKB_00088 0.19 -0.0
93,193 - OHPLBJKB_00088 0.19 +1.0
93,199 - OHPLBJKB_00088 0.21 +0.2
93,244 - OHPLBJKB_00088 0.31 -0.0
93,244 - OHPLBJKB_00088 0.31 -0.3
93,285 - OHPLBJKB_00088 0.41 +0.1
93,327 + OHPLBJKB_00088 0.50 -0.2
93,327 + OHPLBJKB_00088 0.50 -0.4
93,327 + OHPLBJKB_00088 0.50 +0.0
93,328 - OHPLBJKB_00088 0.51 -1.0
93,328 - OHPLBJKB_00088 0.51 -0.1
93,328 - OHPLBJKB_00088 0.51 -0.1
93,328 - OHPLBJKB_00088 0.51 -0.2
93,328 - OHPLBJKB_00088 0.51 -0.1
93,328 - OHPLBJKB_00088 0.51 +1.0
93,328 - OHPLBJKB_00088 0.51 +0.9
93,328 - OHPLBJKB_00088 0.51 -0.0
93,328 - OHPLBJKB_00088 0.51 -0.3
93,328 - OHPLBJKB_00088 0.51 +1.8
93,473 + OHPLBJKB_00088 0.84 +0.7
93,474 - OHPLBJKB_00088 0.84 -2.4
93,474 - OHPLBJKB_00088 0.84 -1.4
93,474 - OHPLBJKB_00088 0.84 -0.3
93,538 + +0.8
93,539 - -0.0
93,539 - +1.5
93,543 + -0.4
93,544 - +0.0
93,582 + -0.2
93,582 + +0.0
93,598 + -0.3
93,598 + -0.6
93,598 + +0.2
93,598 + -0.3
93,598 + +0.1
93,599 - +1.6
93,599 - +0.2
93,599 - +1.0
93,599 - -1.1
93,599 - -1.3
93,599 - +0.3
93,599 - +0.9
93,599 - +0.1
93,599 - +1.2
93,599 - -0.3
93,604 + -0.9
93,604 + +0.1
93,604 + -0.3
93,605 - +0.5
93,606 + +0.3
93,606 + +0.1
93,606 + +0.6
93,606 + +0.3
93,606 + -0.5
93,676 + -0.1
93,676 + -0.9
93,676 + -0.6
93,681 + -0.0
93,700 + -0.5
93,700 + +0.7
93,889 + OHPLBJKB_00089 0.82 -0.8
93,889 + OHPLBJKB_00089 0.82 -0.1
93,889 + OHPLBJKB_00089 0.82 -0.6
93,931 + -0.5
93,931 + +0.6
93,951 + -0.2
93,951 + +1.5
93,951 + -0.2
93,951 + -0.2
93,963 + -0.8
93,963 + -0.0
93,963 + +0.4
93,967 + -1.2
93,967 + -0.4
93,980 + -0.8

Or see this region's nucleotide sequence