Experiment: Control_HSF
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00076 and OHPLBJKB_00077 are separated by 84 nucleotides OHPLBJKB_00077 and OHPLBJKB_00078 are separated by 45 nucleotides
OHPLBJKB_00076: OHPLBJKB_00076 - General stress protein A, at 78,934 to 79,959
_00076
OHPLBJKB_00077: OHPLBJKB_00077 - Undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 80,044 to 81,027
_00077
OHPLBJKB_00078: OHPLBJKB_00078 - O-antigen ligase, at 81,073 to 82,326
_00078
Position (kb) 80
81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 79.056 kb on + strand, within OHPLBJKB_00076 at 79.056 kb on + strand, within OHPLBJKB_00076 at 79.329 kb on + strand, within OHPLBJKB_00076 at 79.389 kb on + strand, within OHPLBJKB_00076 at 79.407 kb on + strand, within OHPLBJKB_00076 at 79.478 kb on + strand, within OHPLBJKB_00076 at 79.479 kb on - strand, within OHPLBJKB_00076 at 79.533 kb on + strand, within OHPLBJKB_00076 at 79.565 kb on - strand, within OHPLBJKB_00076 at 79.795 kb on + strand, within OHPLBJKB_00076 at 79.864 kb on + strand at 79.865 kb on - strand at 80.307 kb on + strand, within OHPLBJKB_00077 at 80.317 kb on - strand, within OHPLBJKB_00077 at 80.344 kb on - strand, within OHPLBJKB_00077 at 80.363 kb on - strand, within OHPLBJKB_00077 at 80.440 kb on + strand, within OHPLBJKB_00077 at 80.450 kb on + strand, within OHPLBJKB_00077 at 80.463 kb on + strand, within OHPLBJKB_00077 at 80.516 kb on + strand, within OHPLBJKB_00077 at 80.635 kb on + strand, within OHPLBJKB_00077 at 80.651 kb on - strand, within OHPLBJKB_00077 at 80.766 kb on - strand, within OHPLBJKB_00077 at 81.320 kb on - strand, within OHPLBJKB_00078 at 81.340 kb on + strand, within OHPLBJKB_00078 at 81.523 kb on + strand, within OHPLBJKB_00078 at 81.651 kb on - strand, within OHPLBJKB_00078 at 81.654 kb on + strand, within OHPLBJKB_00078 at 81.693 kb on - strand, within OHPLBJKB_00078 at 81.824 kb on + strand, within OHPLBJKB_00078 at 81.867 kb on - strand, within OHPLBJKB_00078 at 81.935 kb on - strand, within OHPLBJKB_00078
Per-strain Table
Position Strand Gene LocusTag Fraction Control_HSF remove 79,056 + OHPLBJKB_00076 0.12 +0.9 79,056 + OHPLBJKB_00076 0.12 -1.1 79,329 + OHPLBJKB_00076 0.38 +0.6 79,389 + OHPLBJKB_00076 0.44 -0.3 79,407 + OHPLBJKB_00076 0.46 +1.0 79,478 + OHPLBJKB_00076 0.53 -0.2 79,479 - OHPLBJKB_00076 0.53 -0.5 79,533 + OHPLBJKB_00076 0.58 +0.6 79,565 - OHPLBJKB_00076 0.62 -1.7 79,795 + OHPLBJKB_00076 0.84 +0.1 79,864 + -0.5 79,865 - -1.2 80,307 + OHPLBJKB_00077 0.27 -0.5 80,317 - OHPLBJKB_00077 0.28 -1.0 80,344 - OHPLBJKB_00077 0.30 -1.8 80,363 - OHPLBJKB_00077 0.32 -0.8 80,440 + OHPLBJKB_00077 0.40 -1.1 80,450 + OHPLBJKB_00077 0.41 -0.3 80,463 + OHPLBJKB_00077 0.43 -2.7 80,516 + OHPLBJKB_00077 0.48 -2.4 80,635 + OHPLBJKB_00077 0.60 -3.2 80,651 - OHPLBJKB_00077 0.62 -1.3 80,766 - OHPLBJKB_00077 0.73 -1.8 81,320 - OHPLBJKB_00078 0.20 +2.5 81,340 + OHPLBJKB_00078 0.21 -0.8 81,523 + OHPLBJKB_00078 0.36 -1.1 81,651 - OHPLBJKB_00078 0.46 -1.3 81,654 + OHPLBJKB_00078 0.46 -0.5 81,693 - OHPLBJKB_00078 0.49 -1.7 81,824 + OHPLBJKB_00078 0.60 -1.5 81,867 - OHPLBJKB_00078 0.63 -2.0 81,935 - OHPLBJKB_00078 0.69 -1.3
Or see this region's nucleotide sequence