Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00072

Experiment: Control_HSF

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_00071 and OHPLBJKB_00072 overlap by 8 nucleotidesOHPLBJKB_00072 and OHPLBJKB_00073 are separated by 15 nucleotides OHPLBJKB_00071: OHPLBJKB_00071 - Lipopolysaccharide core biosynthesis protein RfaG, at 74,248 to 75,372 _00071 OHPLBJKB_00072: OHPLBJKB_00072 - Lipopolysaccharide core heptose(I) kinase RfaP, at 75,365 to 76,162 _00072 OHPLBJKB_00073: OHPLBJKB_00073 - hypothetical protein, at 76,178 to 77,194 _00073 Position (kb) 75 76 77Strain fitness (log2 ratio) -3 -2 -1 0 1at 74.836 kb on + strand, within OHPLBJKB_00071at 74.836 kb on + strand, within OHPLBJKB_00071at 74.840 kb on + strand, within OHPLBJKB_00071at 74.840 kb on + strand, within OHPLBJKB_00071at 75.317 kb on + strandat 75.317 kb on + strandat 75.319 kb on + strandat 75.427 kb on + strandat 75.503 kb on + strand, within OHPLBJKB_00072at 75.543 kb on + strand, within OHPLBJKB_00072at 75.579 kb on + strand, within OHPLBJKB_00072at 75.637 kb on + strand, within OHPLBJKB_00072at 75.637 kb on + strand, within OHPLBJKB_00072at 75.637 kb on + strand, within OHPLBJKB_00072at 75.637 kb on + strand, within OHPLBJKB_00072at 75.641 kb on + strand, within OHPLBJKB_00072at 75.641 kb on + strand, within OHPLBJKB_00072at 75.723 kb on + strand, within OHPLBJKB_00072at 75.790 kb on + strand, within OHPLBJKB_00072at 75.790 kb on + strand, within OHPLBJKB_00072at 75.854 kb on + strand, within OHPLBJKB_00072at 75.854 kb on + strand, within OHPLBJKB_00072at 75.854 kb on + strand, within OHPLBJKB_00072at 75.856 kb on + strand, within OHPLBJKB_00072at 75.856 kb on + strand, within OHPLBJKB_00072at 75.856 kb on + strand, within OHPLBJKB_00072at 75.856 kb on + strand, within OHPLBJKB_00072at 76.339 kb on + strand, within OHPLBJKB_00073at 76.663 kb on + strand, within OHPLBJKB_00073

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Control_HSF
remove
74,836 + OHPLBJKB_00071 0.52 -0.1
74,836 + OHPLBJKB_00071 0.52 -1.3
74,840 + OHPLBJKB_00071 0.53 -2.8
74,840 + OHPLBJKB_00071 0.53 -1.0
75,317 + +0.1
75,317 + -1.8
75,319 + -0.8
75,427 + -1.3
75,503 + OHPLBJKB_00072 0.17 +0.3
75,543 + OHPLBJKB_00072 0.22 -1.8
75,579 + OHPLBJKB_00072 0.27 -0.3
75,637 + OHPLBJKB_00072 0.34 +0.3
75,637 + OHPLBJKB_00072 0.34 -1.7
75,637 + OHPLBJKB_00072 0.34 -2.1
75,637 + OHPLBJKB_00072 0.34 -1.8
75,641 + OHPLBJKB_00072 0.35 -0.5
75,641 + OHPLBJKB_00072 0.35 -1.8
75,723 + OHPLBJKB_00072 0.45 -0.1
75,790 + OHPLBJKB_00072 0.53 -0.5
75,790 + OHPLBJKB_00072 0.53 -0.4
75,854 + OHPLBJKB_00072 0.61 -2.2
75,854 + OHPLBJKB_00072 0.61 -0.1
75,854 + OHPLBJKB_00072 0.61 +0.1
75,856 + OHPLBJKB_00072 0.62 -0.1
75,856 + OHPLBJKB_00072 0.62 -0.1
75,856 + OHPLBJKB_00072 0.62 -0.8
75,856 + OHPLBJKB_00072 0.62 -2.4
76,339 + OHPLBJKB_00073 0.16 -1.1
76,663 + OHPLBJKB_00073 0.48 -0.1

Or see this region's nucleotide sequence