Experiment: Sucrose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS03480 and HMPREF1181_RS03485 overlap by 4 nucleotides HMPREF1181_RS03485 and HMPREF1181_RS03490 are separated by 58 nucleotides
HMPREF1181_RS03480: HMPREF1181_RS03480 - hypothetical protein, at 880,703 to 883,492
_RS03480
HMPREF1181_RS03485: HMPREF1181_RS03485 - hypothetical protein, at 883,489 to 885,324
_RS03485
HMPREF1181_RS03490: HMPREF1181_RS03490 - glycoside hydrolase family 28 protein, at 885,383 to 886,903
_RS03490
Position (kb) 883
884
885
886 Strain fitness (log2 ratio) -1
0
1
2 at 882.589 kb on + strand, within HMPREF1181_RS03480 at 882.629 kb on + strand, within HMPREF1181_RS03480 at 882.629 kb on + strand, within HMPREF1181_RS03480 at 882.637 kb on + strand, within HMPREF1181_RS03480 at 882.638 kb on - strand, within HMPREF1181_RS03480 at 882.659 kb on - strand, within HMPREF1181_RS03480 at 882.698 kb on - strand, within HMPREF1181_RS03480 at 882.729 kb on - strand, within HMPREF1181_RS03480 at 882.806 kb on + strand, within HMPREF1181_RS03480 at 882.806 kb on + strand, within HMPREF1181_RS03480 at 882.807 kb on - strand, within HMPREF1181_RS03480 at 882.808 kb on + strand, within HMPREF1181_RS03480 at 882.873 kb on - strand, within HMPREF1181_RS03480 at 882.904 kb on - strand, within HMPREF1181_RS03480 at 882.916 kb on + strand, within HMPREF1181_RS03480 at 882.917 kb on - strand, within HMPREF1181_RS03480 at 882.930 kb on + strand, within HMPREF1181_RS03480 at 882.930 kb on + strand, within HMPREF1181_RS03480 at 882.950 kb on + strand, within HMPREF1181_RS03480 at 883.028 kb on + strand, within HMPREF1181_RS03480 at 883.028 kb on + strand, within HMPREF1181_RS03480 at 883.029 kb on - strand, within HMPREF1181_RS03480 at 883.030 kb on + strand, within HMPREF1181_RS03480 at 883.030 kb on + strand, within HMPREF1181_RS03480 at 883.030 kb on + strand, within HMPREF1181_RS03480 at 883.030 kb on + strand, within HMPREF1181_RS03480 at 883.031 kb on - strand, within HMPREF1181_RS03480 at 883.088 kb on - strand, within HMPREF1181_RS03480 at 883.114 kb on + strand, within HMPREF1181_RS03480 at 883.114 kb on + strand, within HMPREF1181_RS03480 at 883.198 kb on - strand, within HMPREF1181_RS03480 at 883.201 kb on + strand, within HMPREF1181_RS03480 at 883.202 kb on - strand, within HMPREF1181_RS03480 at 883.228 kb on - strand at 883.283 kb on - strand at 883.283 kb on - strand at 883.407 kb on - strand at 883.407 kb on - strand at 883.440 kb on + strand at 883.441 kb on - strand at 883.450 kb on - strand at 883.454 kb on - strand at 883.456 kb on + strand at 883.474 kb on + strand at 883.541 kb on + strand at 883.542 kb on - strand at 883.542 kb on - strand at 883.542 kb on - strand at 883.543 kb on + strand at 883.593 kb on + strand at 883.593 kb on + strand at 883.652 kb on + strand at 883.752 kb on - strand, within HMPREF1181_RS03485 at 883.933 kb on - strand, within HMPREF1181_RS03485 at 883.933 kb on - strand, within HMPREF1181_RS03485 at 884.005 kb on + strand, within HMPREF1181_RS03485 at 884.005 kb on + strand, within HMPREF1181_RS03485 at 884.012 kb on - strand, within HMPREF1181_RS03485 at 884.012 kb on - strand, within HMPREF1181_RS03485 at 884.012 kb on - strand, within HMPREF1181_RS03485 at 884.012 kb on - strand, within HMPREF1181_RS03485 at 884.040 kb on - strand, within HMPREF1181_RS03485 at 884.062 kb on - strand, within HMPREF1181_RS03485 at 884.077 kb on + strand, within HMPREF1181_RS03485 at 884.084 kb on + strand, within HMPREF1181_RS03485 at 884.106 kb on + strand, within HMPREF1181_RS03485 at 884.111 kb on - strand, within HMPREF1181_RS03485 at 884.123 kb on - strand, within HMPREF1181_RS03485 at 884.174 kb on + strand, within HMPREF1181_RS03485 at 884.215 kb on - strand, within HMPREF1181_RS03485 at 884.233 kb on + strand, within HMPREF1181_RS03485 at 884.416 kb on - strand, within HMPREF1181_RS03485 at 884.592 kb on + strand, within HMPREF1181_RS03485 at 884.597 kb on + strand, within HMPREF1181_RS03485 at 884.598 kb on - strand, within HMPREF1181_RS03485 at 884.598 kb on - strand, within HMPREF1181_RS03485 at 884.608 kb on - strand, within HMPREF1181_RS03485 at 884.783 kb on + strand, within HMPREF1181_RS03485 at 884.802 kb on + strand, within HMPREF1181_RS03485 at 884.802 kb on + strand, within HMPREF1181_RS03485 at 884.803 kb on - strand, within HMPREF1181_RS03485 at 884.803 kb on - strand, within HMPREF1181_RS03485 at 884.807 kb on - strand, within HMPREF1181_RS03485 at 884.807 kb on - strand, within HMPREF1181_RS03485 at 884.813 kb on + strand, within HMPREF1181_RS03485 at 884.906 kb on - strand, within HMPREF1181_RS03485 at 884.906 kb on - strand, within HMPREF1181_RS03485 at 884.939 kb on + strand, within HMPREF1181_RS03485 at 884.940 kb on - strand, within HMPREF1181_RS03485 at 885.102 kb on + strand, within HMPREF1181_RS03485 at 885.103 kb on - strand, within HMPREF1181_RS03485 at 885.119 kb on + strand, within HMPREF1181_RS03485 at 885.254 kb on - strand at 885.256 kb on + strand at 885.257 kb on - strand at 885.308 kb on - strand at 885.308 kb on - strand at 885.312 kb on - strand at 885.322 kb on + strand at 885.323 kb on - strand at 885.325 kb on + strand at 885.326 kb on - strand at 885.332 kb on - strand at 885.368 kb on - strand at 885.399 kb on - strand at 885.403 kb on - strand at 885.403 kb on - strand at 885.427 kb on - strand at 885.454 kb on + strand at 885.458 kb on + strand at 885.471 kb on - strand at 885.578 kb on - strand, within HMPREF1181_RS03490 at 885.829 kb on + strand, within HMPREF1181_RS03490 at 885.829 kb on + strand, within HMPREF1181_RS03490 at 885.829 kb on + strand, within HMPREF1181_RS03490 at 885.829 kb on + strand, within HMPREF1181_RS03490 at 885.831 kb on + strand, within HMPREF1181_RS03490 at 885.941 kb on - strand, within HMPREF1181_RS03490 at 885.991 kb on + strand, within HMPREF1181_RS03490 at 885.992 kb on - strand, within HMPREF1181_RS03490 at 885.997 kb on + strand, within HMPREF1181_RS03490 at 886.091 kb on - strand, within HMPREF1181_RS03490 at 886.202 kb on + strand, within HMPREF1181_RS03490
Per-strain Table
Position Strand Gene LocusTag Fraction Sucrose 10 mM (C) remove 882,589 + HMPREF1181_RS03480 0.68 +0.9 882,629 + HMPREF1181_RS03480 0.69 -0.7 882,629 + HMPREF1181_RS03480 0.69 +0.9 882,637 + HMPREF1181_RS03480 0.69 +0.1 882,638 - HMPREF1181_RS03480 0.69 -0.2 882,659 - HMPREF1181_RS03480 0.70 -0.0 882,698 - HMPREF1181_RS03480 0.72 +0.3 882,729 - HMPREF1181_RS03480 0.73 -0.6 882,806 + HMPREF1181_RS03480 0.75 -0.2 882,806 + HMPREF1181_RS03480 0.75 +1.1 882,807 - HMPREF1181_RS03480 0.75 +0.4 882,808 + HMPREF1181_RS03480 0.75 +1.9 882,873 - HMPREF1181_RS03480 0.78 +0.8 882,904 - HMPREF1181_RS03480 0.79 -0.6 882,916 + HMPREF1181_RS03480 0.79 -0.9 882,917 - HMPREF1181_RS03480 0.79 +0.5 882,930 + HMPREF1181_RS03480 0.80 -0.4 882,930 + HMPREF1181_RS03480 0.80 -0.0 882,950 + HMPREF1181_RS03480 0.81 +0.0 883,028 + HMPREF1181_RS03480 0.83 +0.5 883,028 + HMPREF1181_RS03480 0.83 +0.7 883,029 - HMPREF1181_RS03480 0.83 -0.5 883,030 + HMPREF1181_RS03480 0.83 -0.1 883,030 + HMPREF1181_RS03480 0.83 -0.5 883,030 + HMPREF1181_RS03480 0.83 +1.1 883,030 + HMPREF1181_RS03480 0.83 +0.4 883,031 - HMPREF1181_RS03480 0.83 -0.1 883,088 - HMPREF1181_RS03480 0.85 -0.2 883,114 + HMPREF1181_RS03480 0.86 -1.2 883,114 + HMPREF1181_RS03480 0.86 -0.8 883,198 - HMPREF1181_RS03480 0.89 -0.1 883,201 + HMPREF1181_RS03480 0.90 -0.6 883,202 - HMPREF1181_RS03480 0.90 -0.7 883,228 - -1.0 883,283 - -0.8 883,283 - +0.2 883,407 - -1.1 883,407 - +1.0 883,440 + +0.7 883,441 - -0.2 883,450 - -0.1 883,454 - -0.2 883,456 + -1.2 883,474 + -0.6 883,541 + +0.1 883,542 - -0.2 883,542 - +0.5 883,542 - +1.7 883,543 + +1.1 883,593 + -0.6 883,593 + +0.4 883,652 + +0.1 883,752 - HMPREF1181_RS03485 0.14 -0.3 883,933 - HMPREF1181_RS03485 0.24 +0.5 883,933 - HMPREF1181_RS03485 0.24 -0.1 884,005 + HMPREF1181_RS03485 0.28 -0.2 884,005 + HMPREF1181_RS03485 0.28 +1.6 884,012 - HMPREF1181_RS03485 0.28 +0.1 884,012 - HMPREF1181_RS03485 0.28 -1.4 884,012 - HMPREF1181_RS03485 0.28 -0.0 884,012 - HMPREF1181_RS03485 0.28 -0.6 884,040 - HMPREF1181_RS03485 0.30 +0.1 884,062 - HMPREF1181_RS03485 0.31 -0.5 884,077 + HMPREF1181_RS03485 0.32 -0.4 884,084 + HMPREF1181_RS03485 0.32 -0.2 884,106 + HMPREF1181_RS03485 0.34 +1.3 884,111 - HMPREF1181_RS03485 0.34 -0.0 884,123 - HMPREF1181_RS03485 0.35 +0.2 884,174 + HMPREF1181_RS03485 0.37 +1.8 884,215 - HMPREF1181_RS03485 0.40 -1.0 884,233 + HMPREF1181_RS03485 0.41 -0.4 884,416 - HMPREF1181_RS03485 0.50 -0.4 884,592 + HMPREF1181_RS03485 0.60 +0.5 884,597 + HMPREF1181_RS03485 0.60 +0.9 884,598 - HMPREF1181_RS03485 0.60 -0.1 884,598 - HMPREF1181_RS03485 0.60 -0.3 884,608 - HMPREF1181_RS03485 0.61 -0.5 884,783 + HMPREF1181_RS03485 0.70 -0.8 884,802 + HMPREF1181_RS03485 0.72 -0.2 884,802 + HMPREF1181_RS03485 0.72 +0.4 884,803 - HMPREF1181_RS03485 0.72 +0.2 884,803 - HMPREF1181_RS03485 0.72 +0.0 884,807 - HMPREF1181_RS03485 0.72 -0.2 884,807 - HMPREF1181_RS03485 0.72 -0.7 884,813 + HMPREF1181_RS03485 0.72 -0.9 884,906 - HMPREF1181_RS03485 0.77 -0.4 884,906 - HMPREF1181_RS03485 0.77 +0.0 884,939 + HMPREF1181_RS03485 0.79 -0.8 884,940 - HMPREF1181_RS03485 0.79 +0.1 885,102 + HMPREF1181_RS03485 0.88 -1.7 885,103 - HMPREF1181_RS03485 0.88 -0.1 885,119 + HMPREF1181_RS03485 0.89 -0.4 885,254 - -0.4 885,256 + -0.3 885,257 - +0.5 885,308 - -0.5 885,308 - -0.8 885,312 - +1.0 885,322 + +0.2 885,323 - +0.4 885,325 + -0.4 885,326 - -0.1 885,332 - -1.1 885,368 - +0.2 885,399 - +0.5 885,403 - +0.1 885,403 - +0.1 885,427 - -1.6 885,454 + -0.1 885,458 + -0.3 885,471 - -0.2 885,578 - HMPREF1181_RS03490 0.13 -0.2 885,829 + HMPREF1181_RS03490 0.29 -0.6 885,829 + HMPREF1181_RS03490 0.29 +0.2 885,829 + HMPREF1181_RS03490 0.29 -0.1 885,829 + HMPREF1181_RS03490 0.29 -0.7 885,831 + HMPREF1181_RS03490 0.29 -0.2 885,941 - HMPREF1181_RS03490 0.37 -0.1 885,991 + HMPREF1181_RS03490 0.40 +0.5 885,992 - HMPREF1181_RS03490 0.40 +0.0 885,997 + HMPREF1181_RS03490 0.40 +0.1 886,091 - HMPREF1181_RS03490 0.47 +0.2 886,202 + HMPREF1181_RS03490 0.54 -0.2
Or see this region's nucleotide sequence