Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS14040

Experiment: NAG 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS14030 and HMPREF1181_RS14035 are separated by 150 nucleotidesHMPREF1181_RS14035 and HMPREF1181_RS14040 are separated by 15 nucleotidesHMPREF1181_RS14040 and HMPREF1181_RS14045 are separated by 311 nucleotides HMPREF1181_RS14030: HMPREF1181_RS14030 - N-acetyltransferase, at 327,767 to 328,285 _RS14030 HMPREF1181_RS14035: HMPREF1181_RS14035 - chaperone modulator CbpM, at 328,436 to 328,732 _RS14035 HMPREF1181_RS14040: HMPREF1181_RS14040 - J domain-containing protein, at 328,748 to 329,725 _RS14040 HMPREF1181_RS14045: HMPREF1181_RS14045 - glycoside hydrolase family 9 protein, at 330,037 to 332,565 _RS14045 Position (kb) 328 329 330Strain fitness (log2 ratio) -2 -1 0 1 2at 327.768 kb on + strandat 327.768 kb on + strandat 327.768 kb on + strandat 327.773 kb on - strandat 327.831 kb on + strand, within HMPREF1181_RS14030at 327.859 kb on + strand, within HMPREF1181_RS14030at 327.864 kb on + strand, within HMPREF1181_RS14030at 327.880 kb on + strand, within HMPREF1181_RS14030at 327.880 kb on + strand, within HMPREF1181_RS14030at 327.880 kb on + strand, within HMPREF1181_RS14030at 327.881 kb on - strand, within HMPREF1181_RS14030at 327.900 kb on + strand, within HMPREF1181_RS14030at 327.931 kb on + strand, within HMPREF1181_RS14030at 327.931 kb on + strand, within HMPREF1181_RS14030at 327.931 kb on + strand, within HMPREF1181_RS14030at 327.994 kb on + strand, within HMPREF1181_RS14030at 327.994 kb on + strand, within HMPREF1181_RS14030at 328.030 kb on + strand, within HMPREF1181_RS14030at 328.030 kb on + strand, within HMPREF1181_RS14030at 328.030 kb on + strand, within HMPREF1181_RS14030at 328.031 kb on - strand, within HMPREF1181_RS14030at 328.036 kb on + strand, within HMPREF1181_RS14030at 328.036 kb on + strand, within HMPREF1181_RS14030at 328.037 kb on - strand, within HMPREF1181_RS14030at 328.037 kb on - strand, within HMPREF1181_RS14030at 328.041 kb on + strand, within HMPREF1181_RS14030at 328.068 kb on + strand, within HMPREF1181_RS14030at 328.069 kb on - strand, within HMPREF1181_RS14030at 328.121 kb on + strand, within HMPREF1181_RS14030at 328.122 kb on - strand, within HMPREF1181_RS14030at 328.163 kb on + strand, within HMPREF1181_RS14030at 328.170 kb on + strand, within HMPREF1181_RS14030at 328.171 kb on - strand, within HMPREF1181_RS14030at 328.230 kb on + strand, within HMPREF1181_RS14030at 328.242 kb on + strandat 328.269 kb on - strandat 328.310 kb on - strandat 328.364 kb on - strandat 328.400 kb on - strandat 328.426 kb on - strandat 328.437 kb on + strandat 328.468 kb on + strand, within HMPREF1181_RS14035at 328.469 kb on - strand, within HMPREF1181_RS14035at 328.496 kb on - strand, within HMPREF1181_RS14035at 328.563 kb on + strand, within HMPREF1181_RS14035at 328.563 kb on + strand, within HMPREF1181_RS14035at 328.568 kb on - strand, within HMPREF1181_RS14035at 328.641 kb on - strand, within HMPREF1181_RS14035at 328.641 kb on - strand, within HMPREF1181_RS14035at 328.682 kb on + strand, within HMPREF1181_RS14035at 328.683 kb on - strand, within HMPREF1181_RS14035at 328.683 kb on - strand, within HMPREF1181_RS14035at 328.718 kb on + strandat 328.732 kb on + strandat 328.757 kb on - strandat 328.821 kb on + strandat 328.821 kb on + strandat 329.008 kb on - strand, within HMPREF1181_RS14040at 329.288 kb on - strand, within HMPREF1181_RS14040at 329.367 kb on + strand, within HMPREF1181_RS14040at 329.377 kb on + strand, within HMPREF1181_RS14040at 329.378 kb on - strand, within HMPREF1181_RS14040at 329.378 kb on - strand, within HMPREF1181_RS14040at 329.529 kb on + strand, within HMPREF1181_RS14040at 329.579 kb on - strand, within HMPREF1181_RS14040at 329.603 kb on - strand, within HMPREF1181_RS14040at 329.647 kb on + strandat 329.718 kb on + strandat 329.731 kb on - strandat 329.764 kb on + strandat 329.785 kb on - strandat 329.857 kb on + strandat 329.857 kb on + strandat 329.870 kb on - strandat 329.951 kb on + strandat 329.987 kb on - strandat 330.004 kb on - strandat 330.037 kb on - strandat 330.047 kb on - strandat 330.147 kb on + strandat 330.152 kb on + strandat 330.279 kb on + strandat 330.322 kb on + strand, within HMPREF1181_RS14045at 330.322 kb on + strand, within HMPREF1181_RS14045at 330.322 kb on + strand, within HMPREF1181_RS14045at 330.377 kb on + strand, within HMPREF1181_RS14045at 330.378 kb on - strand, within HMPREF1181_RS14045at 330.379 kb on + strand, within HMPREF1181_RS14045at 330.379 kb on + strand, within HMPREF1181_RS14045at 330.379 kb on + strand, within HMPREF1181_RS14045at 330.380 kb on - strand, within HMPREF1181_RS14045at 330.454 kb on - strand, within HMPREF1181_RS14045at 330.479 kb on + strand, within HMPREF1181_RS14045at 330.480 kb on - strand, within HMPREF1181_RS14045at 330.485 kb on - strand, within HMPREF1181_RS14045at 330.559 kb on - strand, within HMPREF1181_RS14045at 330.582 kb on - strand, within HMPREF1181_RS14045at 330.634 kb on + strand, within HMPREF1181_RS14045at 330.678 kb on - strand, within HMPREF1181_RS14045at 330.680 kb on + strand, within HMPREF1181_RS14045

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Per-strain Table

Position Strand Gene LocusTag Fraction NAG 10 mM (C)
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327,768 + -0.1
327,768 + -1.1
327,768 + +0.1
327,773 - -0.0
327,831 + HMPREF1181_RS14030 0.12 +0.2
327,859 + HMPREF1181_RS14030 0.18 -0.0
327,864 + HMPREF1181_RS14030 0.19 +0.4
327,880 + HMPREF1181_RS14030 0.22 -0.2
327,880 + HMPREF1181_RS14030 0.22 -0.1
327,880 + HMPREF1181_RS14030 0.22 -0.7
327,881 - HMPREF1181_RS14030 0.22 +0.6
327,900 + HMPREF1181_RS14030 0.26 +0.2
327,931 + HMPREF1181_RS14030 0.32 -1.2
327,931 + HMPREF1181_RS14030 0.32 +0.5
327,931 + HMPREF1181_RS14030 0.32 -0.2
327,994 + HMPREF1181_RS14030 0.44 -0.1
327,994 + HMPREF1181_RS14030 0.44 +0.9
328,030 + HMPREF1181_RS14030 0.51 -0.2
328,030 + HMPREF1181_RS14030 0.51 +0.3
328,030 + HMPREF1181_RS14030 0.51 -0.4
328,031 - HMPREF1181_RS14030 0.51 -0.0
328,036 + HMPREF1181_RS14030 0.52 -0.1
328,036 + HMPREF1181_RS14030 0.52 -0.3
328,037 - HMPREF1181_RS14030 0.52 -0.0
328,037 - HMPREF1181_RS14030 0.52 -0.0
328,041 + HMPREF1181_RS14030 0.53 +0.6
328,068 + HMPREF1181_RS14030 0.58 -0.3
328,069 - HMPREF1181_RS14030 0.58 +0.5
328,121 + HMPREF1181_RS14030 0.68 -1.1
328,122 - HMPREF1181_RS14030 0.68 -0.6
328,163 + HMPREF1181_RS14030 0.76 +0.7
328,170 + HMPREF1181_RS14030 0.78 -0.1
328,171 - HMPREF1181_RS14030 0.78 +0.8
328,230 + HMPREF1181_RS14030 0.89 -0.4
328,242 + -0.5
328,269 - +0.4
328,310 - +0.1
328,364 - -0.4
328,400 - -0.1
328,426 - +0.9
328,437 + -0.0
328,468 + HMPREF1181_RS14035 0.11 -0.6
328,469 - HMPREF1181_RS14035 0.11 -0.4
328,496 - HMPREF1181_RS14035 0.20 +1.2
328,563 + HMPREF1181_RS14035 0.43 -0.5
328,563 + HMPREF1181_RS14035 0.43 -0.7
328,568 - HMPREF1181_RS14035 0.44 -0.7
328,641 - HMPREF1181_RS14035 0.69 +0.1
328,641 - HMPREF1181_RS14035 0.69 -0.2
328,682 + HMPREF1181_RS14035 0.83 -0.0
328,683 - HMPREF1181_RS14035 0.83 -0.7
328,683 - HMPREF1181_RS14035 0.83 -0.6
328,718 + -0.1
328,732 + +0.1
328,757 - +0.6
328,821 + +0.3
328,821 + -0.5
329,008 - HMPREF1181_RS14040 0.27 -0.5
329,288 - HMPREF1181_RS14040 0.55 +0.2
329,367 + HMPREF1181_RS14040 0.63 -0.2
329,377 + HMPREF1181_RS14040 0.64 +0.7
329,378 - HMPREF1181_RS14040 0.64 -0.4
329,378 - HMPREF1181_RS14040 0.64 -0.5
329,529 + HMPREF1181_RS14040 0.80 -0.8
329,579 - HMPREF1181_RS14040 0.85 -0.4
329,603 - HMPREF1181_RS14040 0.87 +0.1
329,647 + +0.4
329,718 + +0.3
329,731 - +0.1
329,764 + +0.3
329,785 - -1.9
329,857 + +0.7
329,857 + +1.1
329,870 - +1.8
329,951 + +0.4
329,987 - +0.7
330,004 - +0.3
330,037 - +0.4
330,047 - -1.3
330,147 + +0.5
330,152 + +0.1
330,279 + -0.3
330,322 + HMPREF1181_RS14045 0.11 +1.7
330,322 + HMPREF1181_RS14045 0.11 +0.2
330,322 + HMPREF1181_RS14045 0.11 -0.4
330,377 + HMPREF1181_RS14045 0.13 +0.1
330,378 - HMPREF1181_RS14045 0.13 -0.3
330,379 + HMPREF1181_RS14045 0.14 -0.2
330,379 + HMPREF1181_RS14045 0.14 +0.4
330,379 + HMPREF1181_RS14045 0.14 -0.4
330,380 - HMPREF1181_RS14045 0.14 +0.4
330,454 - HMPREF1181_RS14045 0.16 +0.1
330,479 + HMPREF1181_RS14045 0.17 -1.0
330,480 - HMPREF1181_RS14045 0.18 +0.4
330,485 - HMPREF1181_RS14045 0.18 -1.0
330,559 - HMPREF1181_RS14045 0.21 +0.5
330,582 - HMPREF1181_RS14045 0.22 -0.4
330,634 + HMPREF1181_RS14045 0.24 +0.2
330,678 - HMPREF1181_RS14045 0.25 +0.1
330,680 + HMPREF1181_RS14045 0.25 +1.4

Or see this region's nucleotide sequence