Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS06960 and HMPREF1181_RS06965 overlap by 1 nucleotides HMPREF1181_RS06965 and HMPREF1181_RS06970 are separated by 169 nucleotides HMPREF1181_RS06970 and HMPREF1181_RS06975 are separated by 90 nucleotides
HMPREF1181_RS06960: HMPREF1181_RS06960 - fumarylacetoacetate hydrolase family protein, at 784,493 to 785,110
_RS06960
HMPREF1181_RS06965: HMPREF1181_RS06965 - redox-sensing transcriptional repressor Rex, at 785,110 to 785,766
_RS06965
HMPREF1181_RS06970: HMPREF1181_RS06970 - translation initiation factor, at 785,936 to 786,295
_RS06970
HMPREF1181_RS06975: HMPREF1181_RS06975 - elongation factor Ts, at 786,386 to 787,378
_RS06975
Position (kb) 785
786
787 Strain fitness (log2 ratio) -2
-1
0
1 at 784.950 kb on + strand, within HMPREF1181_RS06960 at 785.029 kb on + strand, within HMPREF1181_RS06960 at 785.163 kb on - strand at 785.186 kb on - strand, within HMPREF1181_RS06965 at 785.186 kb on - strand, within HMPREF1181_RS06965 at 785.187 kb on + strand, within HMPREF1181_RS06965 at 785.187 kb on + strand, within HMPREF1181_RS06965 at 785.227 kb on + strand, within HMPREF1181_RS06965 at 785.283 kb on + strand, within HMPREF1181_RS06965 at 785.315 kb on + strand, within HMPREF1181_RS06965 at 785.316 kb on - strand, within HMPREF1181_RS06965 at 785.396 kb on - strand, within HMPREF1181_RS06965 at 785.494 kb on - strand, within HMPREF1181_RS06965 at 785.497 kb on + strand, within HMPREF1181_RS06965 at 785.545 kb on + strand, within HMPREF1181_RS06965 at 785.546 kb on - strand, within HMPREF1181_RS06965 at 785.546 kb on - strand, within HMPREF1181_RS06965 at 785.586 kb on - strand, within HMPREF1181_RS06965 at 785.586 kb on - strand, within HMPREF1181_RS06965 at 785.736 kb on + strand at 785.778 kb on + strand at 785.826 kb on + strand at 785.826 kb on + strand at 785.833 kb on + strand at 785.833 kb on + strand at 785.833 kb on + strand at 785.834 kb on - strand at 785.834 kb on - strand at 785.834 kb on - strand at 785.834 kb on - strand at 785.856 kb on + strand at 785.857 kb on - strand at 785.857 kb on - strand at 785.932 kb on - strand at 785.933 kb on + strand at 785.935 kb on + strand at 785.941 kb on + strand at 785.983 kb on - strand, within HMPREF1181_RS06970 at 785.987 kb on + strand, within HMPREF1181_RS06970 at 786.176 kb on - strand, within HMPREF1181_RS06970 at 786.219 kb on + strand, within HMPREF1181_RS06970 at 786.253 kb on - strand, within HMPREF1181_RS06970 at 786.255 kb on + strand, within HMPREF1181_RS06970 at 786.272 kb on - strand at 786.272 kb on - strand at 786.317 kb on + strand at 786.321 kb on - strand at 786.371 kb on + strand at 786.387 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 784,950 + HMPREF1181_RS06960 0.74 -0.4 785,029 + HMPREF1181_RS06960 0.87 +0.5 785,163 - -1.1 785,186 - HMPREF1181_RS06965 0.12 -1.1 785,186 - HMPREF1181_RS06965 0.12 +0.1 785,187 + HMPREF1181_RS06965 0.12 -0.1 785,187 + HMPREF1181_RS06965 0.12 -0.5 785,227 + HMPREF1181_RS06965 0.18 -0.2 785,283 + HMPREF1181_RS06965 0.26 +0.4 785,315 + HMPREF1181_RS06965 0.31 -0.7 785,316 - HMPREF1181_RS06965 0.31 -1.3 785,396 - HMPREF1181_RS06965 0.44 -0.5 785,494 - HMPREF1181_RS06965 0.58 -0.1 785,497 + HMPREF1181_RS06965 0.59 -0.7 785,545 + HMPREF1181_RS06965 0.66 +0.0 785,546 - HMPREF1181_RS06965 0.66 +0.1 785,546 - HMPREF1181_RS06965 0.66 -1.5 785,586 - HMPREF1181_RS06965 0.72 +0.7 785,586 - HMPREF1181_RS06965 0.72 +0.1 785,736 + -0.7 785,778 + +0.1 785,826 + -0.2 785,826 + +0.4 785,833 + +0.3 785,833 + -0.1 785,833 + +0.5 785,834 - -0.2 785,834 - -0.0 785,834 - +0.3 785,834 - -0.1 785,856 + -0.1 785,857 - +0.4 785,857 - +0.0 785,932 - +0.1 785,933 + -1.3 785,935 + -1.9 785,941 + -0.4 785,983 - HMPREF1181_RS06970 0.13 -0.7 785,987 + HMPREF1181_RS06970 0.14 -0.7 786,176 - HMPREF1181_RS06970 0.67 -0.3 786,219 + HMPREF1181_RS06970 0.79 -0.4 786,253 - HMPREF1181_RS06970 0.88 -1.0 786,255 + HMPREF1181_RS06970 0.89 +0.1 786,272 - +0.0 786,272 - +0.2 786,317 + +0.5 786,321 - -0.4 786,371 + -1.2 786,387 + -0.3
Or see this region's nucleotide sequence