Experiment: D-Glucosamine Hydrochloride 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS03435 and HMPREF1181_RS03440 are separated by 28 nucleotides HMPREF1181_RS03440 and HMPREF1181_RS03445 are separated by 123 nucleotides HMPREF1181_RS03445 and HMPREF1181_RS03450 are separated by 33 nucleotides
HMPREF1181_RS03435: HMPREF1181_RS03435 - cupin domain-containing protein, at 871,547 to 872,101
_RS03435
HMPREF1181_RS03440: HMPREF1181_RS03440 - pyrroline-5-carboxylate reductase, at 872,130 to 872,903
_RS03440
HMPREF1181_RS03445: HMPREF1181_RS03445 - aspartate aminotransferase family protein, at 873,027 to 874,148
_RS03445
HMPREF1181_RS03450: HMPREF1181_RS03450 - N-acetyl-gamma-glutamyl-phosphate reductase, at 874,182 to 875,150
_RS03450
HMPREF1181_RS03455: HMPREF1181_RS03455 - PspC domain-containing protein, at 875,143 to 875,361
_RS03455
Position (kb) 873
874
875 Strain fitness (log2 ratio) -9
-8
-7
-6
-5
-4
-3
-2
-1
0
1 at 872.048 kb on + strand at 872.111 kb on - strand at 872.123 kb on - strand at 872.125 kb on + strand at 872.156 kb on + strand at 872.195 kb on + strand at 872.232 kb on - strand, within HMPREF1181_RS03440 at 872.366 kb on + strand, within HMPREF1181_RS03440 at 872.376 kb on + strand, within HMPREF1181_RS03440 at 872.377 kb on - strand, within HMPREF1181_RS03440 at 872.380 kb on + strand, within HMPREF1181_RS03440 at 872.381 kb on - strand, within HMPREF1181_RS03440 at 872.590 kb on + strand, within HMPREF1181_RS03440 at 872.591 kb on - strand, within HMPREF1181_RS03440 at 872.633 kb on + strand, within HMPREF1181_RS03440 at 872.637 kb on + strand, within HMPREF1181_RS03440 at 872.918 kb on + strand at 872.979 kb on + strand at 872.980 kb on - strand at 872.980 kb on - strand at 872.980 kb on - strand at 873.021 kb on - strand at 873.133 kb on - strand at 873.259 kb on + strand, within HMPREF1181_RS03445 at 873.285 kb on + strand, within HMPREF1181_RS03445 at 873.304 kb on - strand, within HMPREF1181_RS03445 at 873.386 kb on + strand, within HMPREF1181_RS03445 at 873.402 kb on - strand, within HMPREF1181_RS03445 at 873.475 kb on + strand, within HMPREF1181_RS03445 at 873.476 kb on - strand, within HMPREF1181_RS03445 at 873.501 kb on - strand, within HMPREF1181_RS03445 at 873.542 kb on + strand, within HMPREF1181_RS03445 at 873.543 kb on - strand, within HMPREF1181_RS03445 at 873.578 kb on + strand, within HMPREF1181_RS03445 at 873.600 kb on + strand, within HMPREF1181_RS03445 at 873.642 kb on + strand, within HMPREF1181_RS03445 at 873.701 kb on - strand, within HMPREF1181_RS03445 at 873.770 kb on + strand, within HMPREF1181_RS03445 at 873.771 kb on - strand, within HMPREF1181_RS03445 at 874.000 kb on - strand, within HMPREF1181_RS03445 at 874.110 kb on - strand at 874.131 kb on + strand at 874.131 kb on + strand at 874.132 kb on - strand at 874.132 kb on - strand at 874.132 kb on - strand at 874.158 kb on - strand at 874.166 kb on - strand at 874.173 kb on - strand at 874.252 kb on - strand at 874.288 kb on - strand, within HMPREF1181_RS03450 at 874.414 kb on + strand, within HMPREF1181_RS03450 at 874.414 kb on + strand, within HMPREF1181_RS03450 at 874.414 kb on + strand, within HMPREF1181_RS03450 at 874.415 kb on - strand, within HMPREF1181_RS03450 at 874.415 kb on - strand, within HMPREF1181_RS03450 at 874.504 kb on + strand, within HMPREF1181_RS03450 at 874.597 kb on + strand, within HMPREF1181_RS03450 at 874.890 kb on + strand, within HMPREF1181_RS03450 at 874.891 kb on - strand, within HMPREF1181_RS03450 at 874.947 kb on + strand, within HMPREF1181_RS03450 at 874.948 kb on - strand, within HMPREF1181_RS03450 at 875.017 kb on - strand, within HMPREF1181_RS03450 at 875.116 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride 10 mM (C) remove 872,048 + -0.5 872,111 - -0.6 872,123 - +0.4 872,125 + -0.3 872,156 + -6.2 872,195 + -2.1 872,232 - HMPREF1181_RS03440 0.13 -7.2 872,366 + HMPREF1181_RS03440 0.30 -5.3 872,376 + HMPREF1181_RS03440 0.32 -2.6 872,377 - HMPREF1181_RS03440 0.32 -5.1 872,380 + HMPREF1181_RS03440 0.32 -1.2 872,381 - HMPREF1181_RS03440 0.32 -5.9 872,590 + HMPREF1181_RS03440 0.59 -6.7 872,591 - HMPREF1181_RS03440 0.60 -5.9 872,633 + HMPREF1181_RS03440 0.65 -4.5 872,637 + HMPREF1181_RS03440 0.66 -2.2 872,918 + -2.6 872,979 + -0.4 872,980 - -0.8 872,980 - +0.4 872,980 - -0.9 873,021 - -0.3 873,133 - -2.3 873,259 + HMPREF1181_RS03445 0.21 -5.2 873,285 + HMPREF1181_RS03445 0.23 -2.8 873,304 - HMPREF1181_RS03445 0.25 -2.9 873,386 + HMPREF1181_RS03445 0.32 -3.9 873,402 - HMPREF1181_RS03445 0.33 -5.8 873,475 + HMPREF1181_RS03445 0.40 -4.8 873,476 - HMPREF1181_RS03445 0.40 -5.4 873,501 - HMPREF1181_RS03445 0.42 -1.2 873,542 + HMPREF1181_RS03445 0.46 -5.0 873,543 - HMPREF1181_RS03445 0.46 -7.2 873,578 + HMPREF1181_RS03445 0.49 -5.5 873,600 + HMPREF1181_RS03445 0.51 -1.7 873,642 + HMPREF1181_RS03445 0.55 -3.3 873,701 - HMPREF1181_RS03445 0.60 -5.9 873,770 + HMPREF1181_RS03445 0.66 -4.9 873,771 - HMPREF1181_RS03445 0.66 -3.4 874,000 - HMPREF1181_RS03445 0.87 -2.9 874,110 - -3.7 874,131 + -1.3 874,131 + -2.2 874,132 - -3.2 874,132 - -4.9 874,132 - -3.5 874,158 - -0.4 874,166 - +0.3 874,173 - -0.0 874,252 - -8.8 874,288 - HMPREF1181_RS03450 0.11 -2.1 874,414 + HMPREF1181_RS03450 0.24 -5.1 874,414 + HMPREF1181_RS03450 0.24 -1.9 874,414 + HMPREF1181_RS03450 0.24 -3.8 874,415 - HMPREF1181_RS03450 0.24 -2.2 874,415 - HMPREF1181_RS03450 0.24 -4.7 874,504 + HMPREF1181_RS03450 0.33 -4.8 874,597 + HMPREF1181_RS03450 0.43 -2.9 874,890 + HMPREF1181_RS03450 0.73 -2.9 874,891 - HMPREF1181_RS03450 0.73 -4.6 874,947 + HMPREF1181_RS03450 0.79 -3.8 874,948 - HMPREF1181_RS03450 0.79 -6.8 875,017 - HMPREF1181_RS03450 0.86 -4.9 875,116 + -5.5
Or see this region's nucleotide sequence