Experiment: Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OLJFJH_04070 and OLJFJH_04075 overlap by 17 nucleotides OLJFJH_04075 and OLJFJH_04080 are separated by 37 nucleotides OLJFJH_04080 and OLJFJH_04085 are separated by 119 nucleotides
OLJFJH_04070: OLJFJH_04070 - phosphoglycolate phosphatase, at 773,869 to 774,570
_04070
OLJFJH_04075: OLJFJH_04075 - ribulose-phosphate 3-epimerase, at 774,554 to 775,240
_04075
OLJFJH_04080: OLJFJH_04080 - adenine-specific DNA-methyltransferase, at 775,278 to 776,099
_04080
OLJFJH_04085: OLJFJH_04085 - cell division protein DamX, at 776,219 to 777,175
_04085
Position (kb) 775
776
777 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 774.315 kb on - strand, within OLJFJH_04070 at 774.349 kb on + strand, within OLJFJH_04070 at 774.406 kb on - strand, within OLJFJH_04070 at 774.406 kb on - strand, within OLJFJH_04070 at 774.406 kb on - strand, within OLJFJH_04070 at 775.292 kb on - strand at 775.292 kb on - strand at 775.292 kb on - strand at 775.292 kb on - strand at 775.434 kb on - strand, within OLJFJH_04080 at 775.675 kb on + strand, within OLJFJH_04080 at 775.744 kb on + strand, within OLJFJH_04080 at 775.745 kb on - strand, within OLJFJH_04080 at 775.745 kb on - strand, within OLJFJH_04080 at 775.757 kb on + strand, within OLJFJH_04080 at 775.763 kb on - strand, within OLJFJH_04080 at 775.764 kb on + strand, within OLJFJH_04080 at 775.825 kb on + strand, within OLJFJH_04080 at 775.825 kb on + strand, within OLJFJH_04080 at 775.829 kb on - strand, within OLJFJH_04080 at 775.829 kb on - strand, within OLJFJH_04080 at 775.829 kb on - strand, within OLJFJH_04080 at 775.949 kb on + strand, within OLJFJH_04080 at 775.951 kb on + strand, within OLJFJH_04080 at 775.952 kb on - strand, within OLJFJH_04080 at 776.057 kb on - strand at 776.060 kb on + strand at 776.060 kb on + strand at 776.061 kb on - strand at 776.061 kb on - strand at 776.061 kb on - strand at 776.061 kb on - strand at 776.061 kb on - strand at 776.112 kb on + strand at 776.112 kb on + strand at 776.112 kb on + strand at 776.113 kb on - strand at 776.113 kb on - strand at 776.113 kb on - strand at 776.113 kb on - strand at 776.113 kb on - strand at 776.113 kb on - strand at 776.117 kb on - strand at 776.117 kb on - strand at 776.117 kb on - strand at 776.117 kb on - strand at 776.147 kb on + strand at 776.147 kb on + strand at 776.147 kb on + strand at 776.147 kb on + strand at 776.148 kb on - strand at 776.148 kb on - strand at 776.148 kb on - strand at 776.159 kb on - strand at 776.220 kb on + strand at 776.279 kb on + strand at 776.279 kb on + strand at 776.279 kb on + strand at 776.279 kb on + strand at 776.331 kb on + strand, within OLJFJH_04085 at 776.352 kb on + strand, within OLJFJH_04085 at 776.353 kb on - strand, within OLJFJH_04085 at 776.353 kb on - strand, within OLJFJH_04085 at 776.353 kb on - strand, within OLJFJH_04085 at 776.353 kb on - strand, within OLJFJH_04085 at 776.383 kb on - strand, within OLJFJH_04085 at 776.483 kb on - strand, within OLJFJH_04085 at 776.483 kb on - strand, within OLJFJH_04085 at 776.832 kb on - strand, within OLJFJH_04085 at 776.941 kb on + strand, within OLJFJH_04085 at 777.064 kb on + strand, within OLJFJH_04085 at 777.065 kb on - strand, within OLJFJH_04085 at 777.065 kb on - strand, within OLJFJH_04085 at 777.065 kb on - strand, within OLJFJH_04085
Per-strain Table
Position Strand Gene LocusTag Fraction Matrix:pear;Phage:Fifi044;Temp:28;Samp:13-1 remove 774,315 - OLJFJH_04070 0.64 -0.0 774,349 + OLJFJH_04070 0.68 -0.2 774,406 - OLJFJH_04070 0.76 +0.2 774,406 - OLJFJH_04070 0.76 -0.4 774,406 - OLJFJH_04070 0.76 -0.7 775,292 - -1.2 775,292 - -0.4 775,292 - +1.8 775,292 - -0.7 775,434 - OLJFJH_04080 0.19 +0.5 775,675 + OLJFJH_04080 0.48 -0.1 775,744 + OLJFJH_04080 0.57 -0.3 775,745 - OLJFJH_04080 0.57 -1.2 775,745 - OLJFJH_04080 0.57 -0.3 775,757 + OLJFJH_04080 0.58 -1.0 775,763 - OLJFJH_04080 0.59 -1.7 775,764 + OLJFJH_04080 0.59 -0.1 775,825 + OLJFJH_04080 0.67 -1.0 775,825 + OLJFJH_04080 0.67 +0.5 775,829 - OLJFJH_04080 0.67 -1.0 775,829 - OLJFJH_04080 0.67 +0.2 775,829 - OLJFJH_04080 0.67 -0.3 775,949 + OLJFJH_04080 0.82 -0.5 775,951 + OLJFJH_04080 0.82 +0.5 775,952 - OLJFJH_04080 0.82 -1.1 776,057 - +0.3 776,060 + -0.4 776,060 + -1.4 776,061 - -0.3 776,061 - -0.6 776,061 - -0.1 776,061 - -2.6 776,061 - -0.8 776,112 + +1.9 776,112 + +0.5 776,112 + -0.3 776,113 - -0.5 776,113 - +1.5 776,113 - -1.8 776,113 - -1.1 776,113 - -0.5 776,113 - -0.0 776,117 - -0.2 776,117 - -0.7 776,117 - -0.0 776,117 - -0.6 776,147 + +4.2 776,147 + -0.3 776,147 + -1.2 776,147 + -1.7 776,148 - +1.4 776,148 - +1.0 776,148 - -0.1 776,159 - +0.6 776,220 + +0.5 776,279 + -1.8 776,279 + -1.4 776,279 + -2.9 776,279 + -1.7 776,331 + OLJFJH_04085 0.12 -1.3 776,352 + OLJFJH_04085 0.14 -1.1 776,353 - OLJFJH_04085 0.14 -0.1 776,353 - OLJFJH_04085 0.14 +0.2 776,353 - OLJFJH_04085 0.14 -0.2 776,353 - OLJFJH_04085 0.14 +1.7 776,383 - OLJFJH_04085 0.17 +1.3 776,483 - OLJFJH_04085 0.28 -1.2 776,483 - OLJFJH_04085 0.28 +0.6 776,832 - OLJFJH_04085 0.64 +3.3 776,941 + OLJFJH_04085 0.75 -1.2 777,064 + OLJFJH_04085 0.88 -0.1 777,065 - OLJFJH_04085 0.88 -2.4 777,065 - OLJFJH_04085 0.88 +1.5 777,065 - OLJFJH_04085 0.88 -1.1
Or see this region's nucleotide sequence