Experiment: D-Galactose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS03700 and HMPREF1181_RS03705 are separated by 23 nucleotides HMPREF1181_RS03705 and HMPREF1181_RS03710 are separated by 356 nucleotides HMPREF1181_RS03710 and HMPREF1181_RS03715 are separated by 200 nucleotides
HMPREF1181_RS03700: HMPREF1181_RS03700 - HlyD family secretion protein, at 944,213 to 945,304
_RS03700
HMPREF1181_RS03705: HMPREF1181_RS03705 - TolC family protein, at 945,328 to 946,653
_RS03705
HMPREF1181_RS03710: HMPREF1181_RS03710 - RNA-binding protein, at 947,010 to 947,309
_RS03710
HMPREF1181_RS03715: HMPREF1181_RS03715 - DEAD/DEAH box helicase, at 947,510 to 948,628
_RS03715
Position (kb) 945
946
947 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 944.423 kb on - strand, within HMPREF1181_RS03700 at 944.429 kb on + strand, within HMPREF1181_RS03700 at 944.430 kb on - strand, within HMPREF1181_RS03700 at 944.453 kb on + strand, within HMPREF1181_RS03700 at 944.454 kb on - strand, within HMPREF1181_RS03700 at 944.509 kb on + strand, within HMPREF1181_RS03700 at 944.523 kb on + strand, within HMPREF1181_RS03700 at 944.675 kb on - strand, within HMPREF1181_RS03700 at 945.034 kb on + strand, within HMPREF1181_RS03700 at 945.034 kb on + strand, within HMPREF1181_RS03700 at 945.039 kb on - strand, within HMPREF1181_RS03700 at 945.060 kb on + strand, within HMPREF1181_RS03700 at 945.073 kb on + strand, within HMPREF1181_RS03700 at 945.075 kb on + strand, within HMPREF1181_RS03700 at 945.090 kb on - strand, within HMPREF1181_RS03700 at 945.105 kb on - strand, within HMPREF1181_RS03700 at 945.105 kb on - strand, within HMPREF1181_RS03700 at 945.116 kb on + strand, within HMPREF1181_RS03700 at 945.180 kb on - strand, within HMPREF1181_RS03700 at 945.236 kb on + strand at 945.237 kb on - strand at 945.242 kb on - strand at 945.294 kb on - strand at 945.308 kb on - strand at 945.308 kb on - strand at 945.330 kb on - strand at 945.337 kb on + strand at 945.338 kb on - strand at 945.338 kb on - strand at 945.343 kb on - strand at 945.343 kb on - strand at 945.343 kb on - strand at 945.347 kb on - strand at 945.389 kb on + strand at 945.408 kb on + strand at 945.411 kb on - strand at 945.411 kb on - strand at 945.501 kb on + strand, within HMPREF1181_RS03705 at 945.502 kb on - strand, within HMPREF1181_RS03705 at 945.502 kb on - strand, within HMPREF1181_RS03705 at 945.505 kb on + strand, within HMPREF1181_RS03705 at 945.505 kb on + strand, within HMPREF1181_RS03705 at 945.506 kb on - strand, within HMPREF1181_RS03705 at 945.529 kb on - strand, within HMPREF1181_RS03705 at 945.529 kb on - strand, within HMPREF1181_RS03705 at 945.550 kb on - strand, within HMPREF1181_RS03705 at 945.631 kb on + strand, within HMPREF1181_RS03705 at 945.633 kb on + strand, within HMPREF1181_RS03705 at 945.694 kb on - strand, within HMPREF1181_RS03705 at 945.694 kb on - strand, within HMPREF1181_RS03705 at 945.815 kb on - strand, within HMPREF1181_RS03705 at 945.825 kb on + strand, within HMPREF1181_RS03705 at 945.958 kb on + strand, within HMPREF1181_RS03705 at 945.958 kb on + strand, within HMPREF1181_RS03705 at 945.959 kb on - strand, within HMPREF1181_RS03705 at 945.959 kb on - strand, within HMPREF1181_RS03705 at 945.984 kb on - strand, within HMPREF1181_RS03705 at 945.996 kb on - strand, within HMPREF1181_RS03705 at 946.048 kb on + strand, within HMPREF1181_RS03705 at 946.084 kb on + strand, within HMPREF1181_RS03705 at 946.208 kb on + strand, within HMPREF1181_RS03705 at 946.208 kb on + strand, within HMPREF1181_RS03705 at 946.208 kb on + strand, within HMPREF1181_RS03705 at 946.268 kb on - strand, within HMPREF1181_RS03705 at 946.279 kb on - strand, within HMPREF1181_RS03705 at 946.370 kb on + strand, within HMPREF1181_RS03705 at 946.370 kb on + strand, within HMPREF1181_RS03705 at 946.371 kb on - strand, within HMPREF1181_RS03705 at 946.371 kb on - strand, within HMPREF1181_RS03705 at 946.371 kb on - strand, within HMPREF1181_RS03705 at 946.375 kb on - strand, within HMPREF1181_RS03705 at 946.375 kb on - strand, within HMPREF1181_RS03705 at 946.375 kb on - strand, within HMPREF1181_RS03705 at 946.430 kb on - strand, within HMPREF1181_RS03705 at 946.442 kb on + strand, within HMPREF1181_RS03705 at 946.558 kb on + strand at 946.643 kb on - strand at 946.666 kb on + strand at 946.711 kb on + strand at 946.712 kb on - strand at 946.712 kb on - strand at 946.764 kb on + strand at 946.765 kb on - strand at 946.806 kb on + strand at 946.809 kb on + strand at 946.869 kb on + strand at 946.874 kb on + strand at 946.916 kb on - strand at 946.918 kb on - strand at 946.935 kb on + strand at 946.941 kb on + strand at 946.944 kb on + strand at 946.945 kb on - strand at 946.945 kb on - strand at 946.983 kb on + strand at 946.990 kb on + strand at 946.990 kb on + strand at 947.037 kb on + strand at 947.045 kb on + strand, within HMPREF1181_RS03710 at 947.048 kb on + strand, within HMPREF1181_RS03710 at 947.049 kb on - strand, within HMPREF1181_RS03710 at 947.149 kb on + strand, within HMPREF1181_RS03710 at 947.208 kb on + strand, within HMPREF1181_RS03710 at 947.231 kb on - strand, within HMPREF1181_RS03710 at 947.270 kb on + strand, within HMPREF1181_RS03710 at 947.289 kb on - strand at 947.289 kb on - strand at 947.308 kb on - strand at 947.355 kb on - strand at 947.506 kb on - strand at 947.507 kb on + strand at 947.508 kb on - strand at 947.508 kb on - strand at 947.509 kb on + strand at 947.527 kb on - strand at 947.530 kb on + strand at 947.589 kb on + strand at 947.589 kb on + strand at 947.595 kb on + strand at 947.630 kb on - strand, within HMPREF1181_RS03715 at 947.631 kb on + strand, within HMPREF1181_RS03715 at 947.631 kb on + strand, within HMPREF1181_RS03715 at 947.632 kb on - strand, within HMPREF1181_RS03715 at 947.634 kb on + strand, within HMPREF1181_RS03715
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mM (C) remove 944,423 - HMPREF1181_RS03700 0.19 -0.1 944,429 + HMPREF1181_RS03700 0.20 -0.0 944,430 - HMPREF1181_RS03700 0.20 -0.6 944,453 + HMPREF1181_RS03700 0.22 -0.5 944,454 - HMPREF1181_RS03700 0.22 -0.5 944,509 + HMPREF1181_RS03700 0.27 -0.5 944,523 + HMPREF1181_RS03700 0.28 +0.1 944,675 - HMPREF1181_RS03700 0.42 +0.7 945,034 + HMPREF1181_RS03700 0.75 -0.3 945,034 + HMPREF1181_RS03700 0.75 -0.8 945,039 - HMPREF1181_RS03700 0.76 -1.1 945,060 + HMPREF1181_RS03700 0.78 +0.4 945,073 + HMPREF1181_RS03700 0.79 +0.4 945,075 + HMPREF1181_RS03700 0.79 -0.5 945,090 - HMPREF1181_RS03700 0.80 +0.0 945,105 - HMPREF1181_RS03700 0.82 -1.8 945,105 - HMPREF1181_RS03700 0.82 -0.6 945,116 + HMPREF1181_RS03700 0.83 -0.3 945,180 - HMPREF1181_RS03700 0.89 -0.6 945,236 + -0.5 945,237 - +0.5 945,242 - -1.6 945,294 - +0.1 945,308 - +0.2 945,308 - -0.1 945,330 - +0.6 945,337 + +0.0 945,338 - +1.1 945,338 - +0.4 945,343 - -0.3 945,343 - +0.8 945,343 - -2.8 945,347 - -1.3 945,389 + +0.1 945,408 + +0.2 945,411 - -1.1 945,411 - -0.8 945,501 + HMPREF1181_RS03705 0.13 -0.5 945,502 - HMPREF1181_RS03705 0.13 -0.1 945,502 - HMPREF1181_RS03705 0.13 +0.3 945,505 + HMPREF1181_RS03705 0.13 +0.0 945,505 + HMPREF1181_RS03705 0.13 +0.4 945,506 - HMPREF1181_RS03705 0.13 -0.6 945,529 - HMPREF1181_RS03705 0.15 -0.9 945,529 - HMPREF1181_RS03705 0.15 -0.5 945,550 - HMPREF1181_RS03705 0.17 -0.4 945,631 + HMPREF1181_RS03705 0.23 -0.5 945,633 + HMPREF1181_RS03705 0.23 -0.5 945,694 - HMPREF1181_RS03705 0.28 -0.2 945,694 - HMPREF1181_RS03705 0.28 +0.1 945,815 - HMPREF1181_RS03705 0.37 +0.2 945,825 + HMPREF1181_RS03705 0.37 +0.2 945,958 + HMPREF1181_RS03705 0.48 -0.1 945,958 + HMPREF1181_RS03705 0.48 -0.3 945,959 - HMPREF1181_RS03705 0.48 +0.1 945,959 - HMPREF1181_RS03705 0.48 +0.0 945,984 - HMPREF1181_RS03705 0.49 -0.3 945,996 - HMPREF1181_RS03705 0.50 -0.3 946,048 + HMPREF1181_RS03705 0.54 +0.2 946,084 + HMPREF1181_RS03705 0.57 -0.1 946,208 + HMPREF1181_RS03705 0.66 +0.1 946,208 + HMPREF1181_RS03705 0.66 -0.0 946,208 + HMPREF1181_RS03705 0.66 -0.1 946,268 - HMPREF1181_RS03705 0.71 -0.6 946,279 - HMPREF1181_RS03705 0.72 +0.5 946,370 + HMPREF1181_RS03705 0.79 -0.3 946,370 + HMPREF1181_RS03705 0.79 -0.1 946,371 - HMPREF1181_RS03705 0.79 -0.7 946,371 - HMPREF1181_RS03705 0.79 -0.4 946,371 - HMPREF1181_RS03705 0.79 -0.0 946,375 - HMPREF1181_RS03705 0.79 +0.3 946,375 - HMPREF1181_RS03705 0.79 -0.4 946,375 - HMPREF1181_RS03705 0.79 -0.2 946,430 - HMPREF1181_RS03705 0.83 -0.1 946,442 + HMPREF1181_RS03705 0.84 -0.3 946,558 + +0.0 946,643 - -0.7 946,666 + +0.2 946,711 + +1.4 946,712 - +1.4 946,712 - -0.5 946,764 + +0.4 946,765 - +0.7 946,806 + +0.8 946,809 + -0.2 946,869 + +0.7 946,874 + -0.3 946,916 - -0.4 946,918 - +0.1 946,935 + +0.2 946,941 + -0.6 946,944 + +0.2 946,945 - +0.5 946,945 - -0.3 946,983 + +1.1 946,990 + -0.5 946,990 + +0.1 947,037 + -0.3 947,045 + HMPREF1181_RS03710 0.12 -0.9 947,048 + HMPREF1181_RS03710 0.13 -1.0 947,049 - HMPREF1181_RS03710 0.13 +0.3 947,149 + HMPREF1181_RS03710 0.46 +1.1 947,208 + HMPREF1181_RS03710 0.66 -0.0 947,231 - HMPREF1181_RS03710 0.74 +0.6 947,270 + HMPREF1181_RS03710 0.87 -0.0 947,289 - +1.2 947,289 - +0.2 947,308 - -0.2 947,355 - +0.2 947,506 - -0.9 947,507 + -0.5 947,508 - -0.0 947,508 - -0.2 947,509 + -0.6 947,527 - +0.2 947,530 + +0.5 947,589 + -0.2 947,589 + +0.3 947,595 + +0.1 947,630 - HMPREF1181_RS03715 0.11 -0.1 947,631 + HMPREF1181_RS03715 0.11 -2.2 947,631 + HMPREF1181_RS03715 0.11 -0.4 947,632 - HMPREF1181_RS03715 0.11 -0.2 947,634 + HMPREF1181_RS03715 0.11 -1.6
Or see this region's nucleotide sequence