Strain Fitness in Bacteroides stercoris CC31F around HMPREF1181_RS03340

Experiment: D-Mannose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1181_RS03335 and HMPREF1181_RS03340 are separated by 140 nucleotidesHMPREF1181_RS03340 and HMPREF1181_RS03345 are separated by 21 nucleotides HMPREF1181_RS03335: HMPREF1181_RS03335 - glutamate racemase, at 849,773 to 850,612 _RS03335 HMPREF1181_RS03340: HMPREF1181_RS03340 - hypothetical protein, at 850,753 to 851,721 _RS03340 HMPREF1181_RS03345: HMPREF1181_RS03345 - porin, at 851,743 to 852,918 _RS03345 Position (kb) 850 851 852Strain fitness (log2 ratio) -2 -1 0 1 2at 849.768 kb on + strandat 849.768 kb on + strandat 849.777 kb on - strandat 850.613 kb on - strandat 850.636 kb on - strandat 850.654 kb on - strandat 850.654 kb on - strandat 850.695 kb on + strandat 850.733 kb on - strandat 850.755 kb on - strandat 850.769 kb on + strandat 850.776 kb on - strandat 850.776 kb on - strandat 850.831 kb on - strandat 850.865 kb on - strand, within HMPREF1181_RS03340at 850.865 kb on - strand, within HMPREF1181_RS03340at 850.981 kb on - strand, within HMPREF1181_RS03340at 850.983 kb on + strand, within HMPREF1181_RS03340at 850.983 kb on + strand, within HMPREF1181_RS03340at 851.000 kb on - strand, within HMPREF1181_RS03340at 851.080 kb on + strand, within HMPREF1181_RS03340at 851.081 kb on - strand, within HMPREF1181_RS03340at 851.102 kb on + strand, within HMPREF1181_RS03340at 851.102 kb on + strand, within HMPREF1181_RS03340at 851.102 kb on + strand, within HMPREF1181_RS03340at 851.103 kb on - strand, within HMPREF1181_RS03340at 851.106 kb on + strand, within HMPREF1181_RS03340at 851.123 kb on + strand, within HMPREF1181_RS03340at 851.225 kb on + strand, within HMPREF1181_RS03340at 851.252 kb on + strand, within HMPREF1181_RS03340at 851.254 kb on + strand, within HMPREF1181_RS03340at 851.254 kb on + strand, within HMPREF1181_RS03340at 851.255 kb on - strand, within HMPREF1181_RS03340at 851.258 kb on + strand, within HMPREF1181_RS03340at 851.258 kb on + strand, within HMPREF1181_RS03340at 851.330 kb on - strand, within HMPREF1181_RS03340at 851.391 kb on - strand, within HMPREF1181_RS03340at 851.533 kb on - strand, within HMPREF1181_RS03340at 851.556 kb on - strand, within HMPREF1181_RS03340at 851.566 kb on - strand, within HMPREF1181_RS03340at 851.566 kb on - strand, within HMPREF1181_RS03340at 851.579 kb on + strand, within HMPREF1181_RS03340at 851.579 kb on + strand, within HMPREF1181_RS03340at 851.580 kb on - strand, within HMPREF1181_RS03340at 851.582 kb on + strand, within HMPREF1181_RS03340at 851.586 kb on - strand, within HMPREF1181_RS03340at 851.688 kb on + strandat 851.711 kb on - strandat 851.736 kb on + strandat 851.739 kb on - strandat 851.803 kb on + strandat 851.804 kb on - strandat 851.804 kb on - strandat 851.826 kb on - strandat 851.840 kb on + strandat 851.840 kb on + strandat 851.844 kb on + strandat 851.851 kb on + strandat 851.903 kb on + strand, within HMPREF1181_RS03345at 851.904 kb on - strand, within HMPREF1181_RS03345at 851.948 kb on + strand, within HMPREF1181_RS03345at 851.953 kb on + strand, within HMPREF1181_RS03345at 851.954 kb on - strand, within HMPREF1181_RS03345at 852.037 kb on - strand, within HMPREF1181_RS03345at 852.043 kb on + strand, within HMPREF1181_RS03345at 852.044 kb on - strand, within HMPREF1181_RS03345at 852.090 kb on - strand, within HMPREF1181_RS03345at 852.100 kb on + strand, within HMPREF1181_RS03345at 852.101 kb on - strand, within HMPREF1181_RS03345at 852.159 kb on - strand, within HMPREF1181_RS03345at 852.185 kb on - strand, within HMPREF1181_RS03345at 852.223 kb on + strand, within HMPREF1181_RS03345at 852.223 kb on + strand, within HMPREF1181_RS03345at 852.258 kb on + strand, within HMPREF1181_RS03345at 852.325 kb on - strand, within HMPREF1181_RS03345at 852.348 kb on + strand, within HMPREF1181_RS03345at 852.349 kb on - strand, within HMPREF1181_RS03345at 852.381 kb on - strand, within HMPREF1181_RS03345at 852.385 kb on + strand, within HMPREF1181_RS03345at 852.386 kb on - strand, within HMPREF1181_RS03345at 852.485 kb on + strand, within HMPREF1181_RS03345at 852.485 kb on + strand, within HMPREF1181_RS03345at 852.503 kb on - strand, within HMPREF1181_RS03345at 852.547 kb on + strand, within HMPREF1181_RS03345at 852.547 kb on + strand, within HMPREF1181_RS03345at 852.548 kb on - strand, within HMPREF1181_RS03345at 852.554 kb on - strand, within HMPREF1181_RS03345at 852.697 kb on + strand, within HMPREF1181_RS03345at 852.697 kb on + strand, within HMPREF1181_RS03345at 852.698 kb on - strand, within HMPREF1181_RS03345at 852.707 kb on + strand, within HMPREF1181_RS03345at 852.708 kb on - strand, within HMPREF1181_RS03345at 852.708 kb on - strand, within HMPREF1181_RS03345

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C)
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849,768 + +0.7
849,768 + -1.8
849,777 - +0.4
850,613 - +0.5
850,636 - +0.5
850,654 - -2.0
850,654 - +1.0
850,695 + +0.2
850,733 - -1.4
850,755 - +0.2
850,769 + -0.1
850,776 - -1.5
850,776 - +1.4
850,831 - +0.7
850,865 - HMPREF1181_RS03340 0.12 -0.9
850,865 - HMPREF1181_RS03340 0.12 -1.2
850,981 - HMPREF1181_RS03340 0.24 +0.9
850,983 + HMPREF1181_RS03340 0.24 -0.3
850,983 + HMPREF1181_RS03340 0.24 +1.0
851,000 - HMPREF1181_RS03340 0.25 -1.2
851,080 + HMPREF1181_RS03340 0.34 -1.3
851,081 - HMPREF1181_RS03340 0.34 -1.4
851,102 + HMPREF1181_RS03340 0.36 -2.2
851,102 + HMPREF1181_RS03340 0.36 +0.5
851,102 + HMPREF1181_RS03340 0.36 +0.2
851,103 - HMPREF1181_RS03340 0.36 -0.7
851,106 + HMPREF1181_RS03340 0.36 -1.4
851,123 + HMPREF1181_RS03340 0.38 +1.1
851,225 + HMPREF1181_RS03340 0.49 +0.5
851,252 + HMPREF1181_RS03340 0.51 +0.5
851,254 + HMPREF1181_RS03340 0.52 -1.6
851,254 + HMPREF1181_RS03340 0.52 +0.0
851,255 - HMPREF1181_RS03340 0.52 +0.7
851,258 + HMPREF1181_RS03340 0.52 +0.9
851,258 + HMPREF1181_RS03340 0.52 -1.1
851,330 - HMPREF1181_RS03340 0.60 -1.8
851,391 - HMPREF1181_RS03340 0.66 +1.0
851,533 - HMPREF1181_RS03340 0.80 +1.0
851,556 - HMPREF1181_RS03340 0.83 +0.4
851,566 - HMPREF1181_RS03340 0.84 -1.8
851,566 - HMPREF1181_RS03340 0.84 +0.8
851,579 + HMPREF1181_RS03340 0.85 +0.3
851,579 + HMPREF1181_RS03340 0.85 +0.7
851,580 - HMPREF1181_RS03340 0.85 +0.9
851,582 + HMPREF1181_RS03340 0.86 -0.1
851,586 - HMPREF1181_RS03340 0.86 -1.1
851,688 + +0.5
851,711 - -2.5
851,736 + +0.2
851,739 - +0.4
851,803 + +0.3
851,804 - -0.9
851,804 - +1.6
851,826 - +0.4
851,840 + -1.4
851,840 + +0.6
851,844 + +0.8
851,851 + -0.8
851,903 + HMPREF1181_RS03345 0.14 +0.4
851,904 - HMPREF1181_RS03345 0.14 -1.3
851,948 + HMPREF1181_RS03345 0.17 -0.0
851,953 + HMPREF1181_RS03345 0.18 +0.4
851,954 - HMPREF1181_RS03345 0.18 +0.9
852,037 - HMPREF1181_RS03345 0.25 +1.1
852,043 + HMPREF1181_RS03345 0.26 -0.4
852,044 - HMPREF1181_RS03345 0.26 -1.0
852,090 - HMPREF1181_RS03345 0.30 +0.9
852,100 + HMPREF1181_RS03345 0.30 +0.6
852,101 - HMPREF1181_RS03345 0.30 +0.3
852,159 - HMPREF1181_RS03345 0.35 +1.2
852,185 - HMPREF1181_RS03345 0.38 +0.8
852,223 + HMPREF1181_RS03345 0.41 +0.8
852,223 + HMPREF1181_RS03345 0.41 +0.3
852,258 + HMPREF1181_RS03345 0.44 -0.5
852,325 - HMPREF1181_RS03345 0.49 -1.4
852,348 + HMPREF1181_RS03345 0.51 -0.6
852,349 - HMPREF1181_RS03345 0.52 -0.3
852,381 - HMPREF1181_RS03345 0.54 -1.3
852,385 + HMPREF1181_RS03345 0.55 +0.8
852,386 - HMPREF1181_RS03345 0.55 -0.3
852,485 + HMPREF1181_RS03345 0.63 -2.3
852,485 + HMPREF1181_RS03345 0.63 +1.2
852,503 - HMPREF1181_RS03345 0.65 -1.3
852,547 + HMPREF1181_RS03345 0.68 +0.3
852,547 + HMPREF1181_RS03345 0.68 +0.7
852,548 - HMPREF1181_RS03345 0.68 -1.9
852,554 - HMPREF1181_RS03345 0.69 +2.0
852,697 + HMPREF1181_RS03345 0.81 +0.7
852,697 + HMPREF1181_RS03345 0.81 -1.7
852,698 - HMPREF1181_RS03345 0.81 -1.2
852,707 + HMPREF1181_RS03345 0.82 +1.2
852,708 - HMPREF1181_RS03345 0.82 +0.5
852,708 - HMPREF1181_RS03345 0.82 +0.4

Or see this region's nucleotide sequence