Experiment: D-Glucose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS10505 and HMPREF1181_RS10510 are separated by 71 nucleotides HMPREF1181_RS10510 and HMPREF1181_RS10515 are separated by 444 nucleotides HMPREF1181_RS10515 and HMPREF1181_RS10520 are separated by 101 nucleotides
HMPREF1181_RS10505: HMPREF1181_RS10505 - hypothetical protein, at 73,599 to 73,901
_RS10505
HMPREF1181_RS10510: HMPREF1181_RS10510 - hypothetical protein, at 73,973 to 74,272
_RS10510
HMPREF1181_RS10515: HMPREF1181_RS10515 - site-specific integrase, at 74,717 to 75,715
_RS10515
HMPREF1181_RS10520: HMPREF1181_RS10520 - TolC family protein, at 75,817 to 77,226
_RS10520
Position (kb) 74
75
76 Strain fitness (log2 ratio) -2
-1
0
1 at 74.002 kb on + strand at 74.002 kb on + strand at 74.733 kb on + strand at 74.734 kb on - strand at 74.774 kb on + strand at 75.069 kb on + strand, within HMPREF1181_RS10515 at 75.169 kb on - strand, within HMPREF1181_RS10515 at 75.266 kb on + strand, within HMPREF1181_RS10515 at 75.368 kb on - strand, within HMPREF1181_RS10515 at 75.369 kb on + strand, within HMPREF1181_RS10515 at 75.369 kb on + strand, within HMPREF1181_RS10515 at 75.370 kb on - strand, within HMPREF1181_RS10515 at 75.598 kb on + strand, within HMPREF1181_RS10515 at 75.604 kb on + strand, within HMPREF1181_RS10515 at 75.610 kb on + strand, within HMPREF1181_RS10515 at 75.610 kb on + strand, within HMPREF1181_RS10515 at 75.610 kb on + strand, within HMPREF1181_RS10515 at 75.611 kb on - strand, within HMPREF1181_RS10515 at 75.615 kb on - strand, within HMPREF1181_RS10515 at 75.667 kb on - strand at 75.744 kb on + strand at 75.786 kb on - strand at 75.811 kb on + strand at 75.815 kb on - strand at 75.817 kb on - strand at 76.029 kb on - strand, within HMPREF1181_RS10520 at 76.200 kb on - strand, within HMPREF1181_RS10520 at 76.259 kb on + strand, within HMPREF1181_RS10520 at 76.411 kb on + strand, within HMPREF1181_RS10520 at 76.411 kb on + strand, within HMPREF1181_RS10520 at 76.448 kb on + strand, within HMPREF1181_RS10520 at 76.449 kb on - strand, within HMPREF1181_RS10520 at 76.552 kb on - strand, within HMPREF1181_RS10520 at 76.584 kb on - strand, within HMPREF1181_RS10520 at 76.663 kb on + strand, within HMPREF1181_RS10520 at 76.664 kb on - strand, within HMPREF1181_RS10520 at 76.664 kb on - strand, within HMPREF1181_RS10520 at 76.664 kb on - strand, within HMPREF1181_RS10520 at 76.695 kb on + strand, within HMPREF1181_RS10520 at 76.697 kb on + strand, within HMPREF1181_RS10520 at 76.698 kb on - strand, within HMPREF1181_RS10520
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 10 mM (C) remove 74,002 + +0.5 74,002 + +0.2 74,733 + +0.6 74,734 - +0.6 74,774 + +0.0 75,069 + HMPREF1181_RS10515 0.35 -0.7 75,169 - HMPREF1181_RS10515 0.45 -2.0 75,266 + HMPREF1181_RS10515 0.55 -0.3 75,368 - HMPREF1181_RS10515 0.65 +1.0 75,369 + HMPREF1181_RS10515 0.65 -0.8 75,369 + HMPREF1181_RS10515 0.65 +0.5 75,370 - HMPREF1181_RS10515 0.65 -1.5 75,598 + HMPREF1181_RS10515 0.88 +0.2 75,604 + HMPREF1181_RS10515 0.89 +0.4 75,610 + HMPREF1181_RS10515 0.89 -1.0 75,610 + HMPREF1181_RS10515 0.89 +0.5 75,610 + HMPREF1181_RS10515 0.89 -0.3 75,611 - HMPREF1181_RS10515 0.89 -0.2 75,615 - HMPREF1181_RS10515 0.90 +0.6 75,667 - +0.1 75,744 + -0.9 75,786 - +0.7 75,811 + -0.7 75,815 - -0.0 75,817 - +0.1 76,029 - HMPREF1181_RS10520 0.15 +1.0 76,200 - HMPREF1181_RS10520 0.27 -1.4 76,259 + HMPREF1181_RS10520 0.31 -1.1 76,411 + HMPREF1181_RS10520 0.42 -1.4 76,411 + HMPREF1181_RS10520 0.42 -0.2 76,448 + HMPREF1181_RS10520 0.45 -1.7 76,449 - HMPREF1181_RS10520 0.45 +1.7 76,552 - HMPREF1181_RS10520 0.52 -0.2 76,584 - HMPREF1181_RS10520 0.54 -1.1 76,663 + HMPREF1181_RS10520 0.60 -2.3 76,664 - HMPREF1181_RS10520 0.60 +0.4 76,664 - HMPREF1181_RS10520 0.60 +0.0 76,664 - HMPREF1181_RS10520 0.60 +0.8 76,695 + HMPREF1181_RS10520 0.62 -1.5 76,697 + HMPREF1181_RS10520 0.62 +0.2 76,698 - HMPREF1181_RS10520 0.62 -0.1
Or see this region's nucleotide sequence