Experiment: RCM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS02460 and HMPREF1181_RS02465 are separated by 11 nucleotides HMPREF1181_RS02465 and HMPREF1181_RS02470 overlap by 4 nucleotides HMPREF1181_RS02470 and HMPREF1181_RS02475 are separated by 3 nucleotides
HMPREF1181_RS02460: HMPREF1181_RS02460 - glycosyltransferase family 2 protein, at 616,505 to 617,404
_RS02460
HMPREF1181_RS02465: HMPREF1181_RS02465 - hypothetical protein, at 617,416 to 618,297
_RS02465
HMPREF1181_RS02470: HMPREF1181_RS02470 - hypothetical protein, at 618,294 to 619,070
_RS02470
HMPREF1181_RS02475: HMPREF1181_RS02475 - alpha-1,2-fucosyltransferase, at 619,074 to 619,937
_RS02475
Position (kb) 618
619
620 Strain fitness (log2 ratio) -2
-1
0
1
2 at 617.364 kb on - strand at 617.397 kb on + strand at 617.447 kb on + strand at 617.447 kb on + strand at 617.447 kb on + strand at 617.516 kb on + strand, within HMPREF1181_RS02465 at 617.516 kb on + strand, within HMPREF1181_RS02465 at 617.516 kb on + strand, within HMPREF1181_RS02465 at 617.523 kb on + strand, within HMPREF1181_RS02465 at 617.547 kb on + strand, within HMPREF1181_RS02465 at 617.639 kb on + strand, within HMPREF1181_RS02465 at 617.639 kb on + strand, within HMPREF1181_RS02465 at 617.639 kb on + strand, within HMPREF1181_RS02465 at 617.644 kb on + strand, within HMPREF1181_RS02465 at 617.657 kb on + strand, within HMPREF1181_RS02465 at 617.702 kb on + strand, within HMPREF1181_RS02465 at 617.709 kb on - strand, within HMPREF1181_RS02465 at 617.739 kb on + strand, within HMPREF1181_RS02465 at 617.788 kb on + strand, within HMPREF1181_RS02465 at 617.789 kb on - strand, within HMPREF1181_RS02465 at 617.789 kb on - strand, within HMPREF1181_RS02465 at 617.822 kb on + strand, within HMPREF1181_RS02465 at 617.822 kb on + strand, within HMPREF1181_RS02465 at 617.873 kb on - strand, within HMPREF1181_RS02465 at 617.964 kb on - strand, within HMPREF1181_RS02465 at 618.022 kb on + strand, within HMPREF1181_RS02465 at 618.025 kb on + strand, within HMPREF1181_RS02465 at 618.073 kb on + strand, within HMPREF1181_RS02465 at 618.074 kb on - strand, within HMPREF1181_RS02465 at 618.074 kb on - strand, within HMPREF1181_RS02465 at 618.079 kb on + strand, within HMPREF1181_RS02465 at 618.080 kb on - strand, within HMPREF1181_RS02465 at 618.175 kb on - strand, within HMPREF1181_RS02465 at 618.175 kb on - strand, within HMPREF1181_RS02465 at 618.177 kb on - strand, within HMPREF1181_RS02465 at 618.209 kb on + strand at 618.217 kb on - strand at 618.225 kb on + strand at 618.281 kb on - strand at 618.285 kb on + strand at 618.287 kb on - strand at 618.338 kb on + strand at 618.379 kb on + strand, within HMPREF1181_RS02470 at 618.379 kb on + strand, within HMPREF1181_RS02470 at 618.379 kb on + strand, within HMPREF1181_RS02470 at 618.379 kb on + strand, within HMPREF1181_RS02470 at 618.380 kb on - strand, within HMPREF1181_RS02470 at 618.380 kb on - strand, within HMPREF1181_RS02470 at 618.414 kb on + strand, within HMPREF1181_RS02470 at 618.461 kb on - strand, within HMPREF1181_RS02470 at 618.512 kb on - strand, within HMPREF1181_RS02470 at 618.550 kb on - strand, within HMPREF1181_RS02470 at 618.582 kb on + strand, within HMPREF1181_RS02470 at 618.618 kb on + strand, within HMPREF1181_RS02470 at 618.618 kb on + strand, within HMPREF1181_RS02470 at 618.632 kb on - strand, within HMPREF1181_RS02470 at 618.635 kb on - strand, within HMPREF1181_RS02470 at 618.653 kb on - strand, within HMPREF1181_RS02470 at 618.658 kb on - strand, within HMPREF1181_RS02470 at 618.658 kb on - strand, within HMPREF1181_RS02470 at 618.661 kb on + strand, within HMPREF1181_RS02470 at 618.661 kb on + strand, within HMPREF1181_RS02470 at 618.662 kb on - strand, within HMPREF1181_RS02470 at 618.689 kb on - strand, within HMPREF1181_RS02470 at 618.689 kb on - strand, within HMPREF1181_RS02470 at 618.718 kb on + strand, within HMPREF1181_RS02470 at 618.718 kb on + strand, within HMPREF1181_RS02470 at 618.718 kb on + strand, within HMPREF1181_RS02470 at 618.718 kb on + strand, within HMPREF1181_RS02470 at 618.719 kb on - strand, within HMPREF1181_RS02470 at 618.783 kb on + strand, within HMPREF1181_RS02470 at 618.801 kb on - strand, within HMPREF1181_RS02470 at 618.921 kb on + strand, within HMPREF1181_RS02470 at 618.922 kb on - strand, within HMPREF1181_RS02470 at 618.926 kb on + strand, within HMPREF1181_RS02470 at 619.052 kb on - strand at 619.076 kb on - strand at 619.080 kb on + strand at 619.080 kb on + strand at 619.098 kb on - strand at 619.223 kb on + strand, within HMPREF1181_RS02475 at 619.229 kb on + strand, within HMPREF1181_RS02475 at 619.342 kb on + strand, within HMPREF1181_RS02475 at 619.366 kb on + strand, within HMPREF1181_RS02475 at 619.367 kb on - strand, within HMPREF1181_RS02475 at 619.369 kb on + strand, within HMPREF1181_RS02475 at 619.418 kb on - strand, within HMPREF1181_RS02475 at 619.472 kb on - strand, within HMPREF1181_RS02475 at 619.492 kb on - strand, within HMPREF1181_RS02475 at 619.519 kb on - strand, within HMPREF1181_RS02475 at 619.519 kb on - strand, within HMPREF1181_RS02475 at 619.584 kb on + strand, within HMPREF1181_RS02475 at 619.584 kb on + strand, within HMPREF1181_RS02475 at 619.584 kb on + strand, within HMPREF1181_RS02475 at 619.584 kb on + strand, within HMPREF1181_RS02475 at 619.584 kb on + strand, within HMPREF1181_RS02475 at 619.584 kb on + strand, within HMPREF1181_RS02475 at 619.585 kb on - strand, within HMPREF1181_RS02475 at 619.585 kb on - strand, within HMPREF1181_RS02475 at 619.640 kb on - strand, within HMPREF1181_RS02475 at 619.641 kb on + strand, within HMPREF1181_RS02475 at 619.644 kb on + strand, within HMPREF1181_RS02475 at 619.768 kb on - strand, within HMPREF1181_RS02475 at 619.819 kb on + strand, within HMPREF1181_RS02475 at 619.819 kb on + strand, within HMPREF1181_RS02475 at 619.819 kb on + strand, within HMPREF1181_RS02475 at 619.889 kb on - strand at 619.938 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCM 1 x (C) complex media remove 617,364 - -2.7 617,397 + +0.1 617,447 + -0.7 617,447 + -0.8 617,447 + -0.4 617,516 + HMPREF1181_RS02465 0.11 -0.2 617,516 + HMPREF1181_RS02465 0.11 +0.3 617,516 + HMPREF1181_RS02465 0.11 -0.5 617,523 + HMPREF1181_RS02465 0.12 -0.4 617,547 + HMPREF1181_RS02465 0.15 +0.1 617,639 + HMPREF1181_RS02465 0.25 -0.9 617,639 + HMPREF1181_RS02465 0.25 -0.7 617,639 + HMPREF1181_RS02465 0.25 +0.0 617,644 + HMPREF1181_RS02465 0.26 +0.2 617,657 + HMPREF1181_RS02465 0.27 +0.2 617,702 + HMPREF1181_RS02465 0.32 -0.3 617,709 - HMPREF1181_RS02465 0.33 +0.1 617,739 + HMPREF1181_RS02465 0.37 -0.2 617,788 + HMPREF1181_RS02465 0.42 +0.0 617,789 - HMPREF1181_RS02465 0.42 -0.1 617,789 - HMPREF1181_RS02465 0.42 -0.0 617,822 + HMPREF1181_RS02465 0.46 -0.6 617,822 + HMPREF1181_RS02465 0.46 +0.0 617,873 - HMPREF1181_RS02465 0.52 +0.1 617,964 - HMPREF1181_RS02465 0.62 -0.5 618,022 + HMPREF1181_RS02465 0.69 -0.5 618,025 + HMPREF1181_RS02465 0.69 -0.1 618,073 + HMPREF1181_RS02465 0.74 -1.1 618,074 - HMPREF1181_RS02465 0.75 -1.1 618,074 - HMPREF1181_RS02465 0.75 +0.3 618,079 + HMPREF1181_RS02465 0.75 -0.2 618,080 - HMPREF1181_RS02465 0.75 -0.0 618,175 - HMPREF1181_RS02465 0.86 -1.3 618,175 - HMPREF1181_RS02465 0.86 -0.2 618,177 - HMPREF1181_RS02465 0.86 -0.0 618,209 + +0.2 618,217 - -0.2 618,225 + +0.3 618,281 - -0.2 618,285 + +0.3 618,287 - -0.0 618,338 + +0.0 618,379 + HMPREF1181_RS02470 0.11 -0.0 618,379 + HMPREF1181_RS02470 0.11 -0.1 618,379 + HMPREF1181_RS02470 0.11 -0.8 618,379 + HMPREF1181_RS02470 0.11 -0.1 618,380 - HMPREF1181_RS02470 0.11 +0.2 618,380 - HMPREF1181_RS02470 0.11 -0.4 618,414 + HMPREF1181_RS02470 0.15 +0.4 618,461 - HMPREF1181_RS02470 0.21 +0.4 618,512 - HMPREF1181_RS02470 0.28 +1.9 618,550 - HMPREF1181_RS02470 0.33 -0.1 618,582 + HMPREF1181_RS02470 0.37 -0.2 618,618 + HMPREF1181_RS02470 0.42 -0.6 618,618 + HMPREF1181_RS02470 0.42 -0.2 618,632 - HMPREF1181_RS02470 0.44 -0.5 618,635 - HMPREF1181_RS02470 0.44 +0.3 618,653 - HMPREF1181_RS02470 0.46 -0.6 618,658 - HMPREF1181_RS02470 0.47 -0.2 618,658 - HMPREF1181_RS02470 0.47 -0.2 618,661 + HMPREF1181_RS02470 0.47 -0.3 618,661 + HMPREF1181_RS02470 0.47 +0.2 618,662 - HMPREF1181_RS02470 0.47 -0.8 618,689 - HMPREF1181_RS02470 0.51 +0.4 618,689 - HMPREF1181_RS02470 0.51 -0.1 618,718 + HMPREF1181_RS02470 0.55 -0.1 618,718 + HMPREF1181_RS02470 0.55 -0.0 618,718 + HMPREF1181_RS02470 0.55 -0.5 618,718 + HMPREF1181_RS02470 0.55 -0.0 618,719 - HMPREF1181_RS02470 0.55 -0.9 618,783 + HMPREF1181_RS02470 0.63 -2.0 618,801 - HMPREF1181_RS02470 0.65 -1.0 618,921 + HMPREF1181_RS02470 0.81 -0.8 618,922 - HMPREF1181_RS02470 0.81 +0.2 618,926 + HMPREF1181_RS02470 0.81 -0.0 619,052 - -1.1 619,076 - +0.8 619,080 + -0.3 619,080 + -0.0 619,098 - -0.7 619,223 + HMPREF1181_RS02475 0.17 -0.6 619,229 + HMPREF1181_RS02475 0.18 -0.3 619,342 + HMPREF1181_RS02475 0.31 -0.4 619,366 + HMPREF1181_RS02475 0.34 -0.6 619,367 - HMPREF1181_RS02475 0.34 -0.4 619,369 + HMPREF1181_RS02475 0.34 +0.3 619,418 - HMPREF1181_RS02475 0.40 -0.1 619,472 - HMPREF1181_RS02475 0.46 +0.1 619,492 - HMPREF1181_RS02475 0.48 -0.1 619,519 - HMPREF1181_RS02475 0.52 -0.2 619,519 - HMPREF1181_RS02475 0.52 -0.1 619,584 + HMPREF1181_RS02475 0.59 +0.2 619,584 + HMPREF1181_RS02475 0.59 +0.9 619,584 + HMPREF1181_RS02475 0.59 +0.3 619,584 + HMPREF1181_RS02475 0.59 -0.4 619,584 + HMPREF1181_RS02475 0.59 +0.1 619,584 + HMPREF1181_RS02475 0.59 +0.6 619,585 - HMPREF1181_RS02475 0.59 +0.0 619,585 - HMPREF1181_RS02475 0.59 +0.3 619,640 - HMPREF1181_RS02475 0.66 +0.2 619,641 + HMPREF1181_RS02475 0.66 +0.2 619,644 + HMPREF1181_RS02475 0.66 -1.5 619,768 - HMPREF1181_RS02475 0.80 +0.4 619,819 + HMPREF1181_RS02475 0.86 +0.7 619,819 + HMPREF1181_RS02475 0.86 +0.1 619,819 + HMPREF1181_RS02475 0.86 +0.1 619,889 - +0.2 619,938 - +0.0
Or see this region's nucleotide sequence