Experiment: GAM 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS00685 and HMPREF1181_RS00690 are separated by 123 nucleotides HMPREF1181_RS00690 and HMPREF1181_RS00695 are separated by 71 nucleotides HMPREF1181_RS00695 and HMPREF1181_RS00700 are separated by 35 nucleotides
HMPREF1181_RS00685: HMPREF1181_RS00685 - DEAD/DEAH box helicase, at 153,811 to 156,255
_RS00685
HMPREF1181_RS00690: HMPREF1181_RS00690 - DUF2795 domain-containing protein, at 156,379 to 156,600
_RS00690
HMPREF1181_RS00695: HMPREF1181_RS00695 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 156,672 to 157,235
_RS00695
HMPREF1181_RS00700: HMPREF1181_RS00700 - hypothetical protein, at 157,271 to 157,903
_RS00700
Position (kb) 156
157 Strain fitness (log2 ratio) -1
0
1 at 155.471 kb on - strand, within HMPREF1181_RS00685 at 155.471 kb on - strand, within HMPREF1181_RS00685 at 155.471 kb on - strand, within HMPREF1181_RS00685 at 155.475 kb on - strand, within HMPREF1181_RS00685 at 155.479 kb on + strand, within HMPREF1181_RS00685 at 155.479 kb on + strand, within HMPREF1181_RS00685 at 155.518 kb on + strand, within HMPREF1181_RS00685 at 155.524 kb on - strand, within HMPREF1181_RS00685 at 155.539 kb on - strand, within HMPREF1181_RS00685 at 155.616 kb on - strand, within HMPREF1181_RS00685 at 155.670 kb on + strand, within HMPREF1181_RS00685 at 155.671 kb on - strand, within HMPREF1181_RS00685 at 155.838 kb on - strand, within HMPREF1181_RS00685 at 155.838 kb on - strand, within HMPREF1181_RS00685 at 155.857 kb on + strand, within HMPREF1181_RS00685 at 155.931 kb on - strand, within HMPREF1181_RS00685 at 156.006 kb on + strand, within HMPREF1181_RS00685 at 156.032 kb on + strand at 156.084 kb on + strand at 156.084 kb on + strand at 156.152 kb on + strand at 156.152 kb on + strand at 156.153 kb on - strand at 156.259 kb on + strand at 156.260 kb on - strand at 156.260 kb on - strand at 156.291 kb on + strand at 156.292 kb on - strand at 156.305 kb on + strand at 156.305 kb on + strand at 156.320 kb on + strand at 156.331 kb on - strand at 156.332 kb on + strand at 156.340 kb on - strand at 156.383 kb on + strand at 156.384 kb on - strand at 156.748 kb on + strand, within HMPREF1181_RS00695 at 156.749 kb on - strand, within HMPREF1181_RS00695 at 156.770 kb on - strand, within HMPREF1181_RS00695 at 156.894 kb on - strand, within HMPREF1181_RS00695 at 156.975 kb on - strand, within HMPREF1181_RS00695 at 157.018 kb on + strand, within HMPREF1181_RS00695 at 157.019 kb on - strand, within HMPREF1181_RS00695 at 157.019 kb on - strand, within HMPREF1181_RS00695 at 157.214 kb on + strand at 157.217 kb on - strand at 157.236 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction GAM 1 x (C) complex media remove 155,471 - HMPREF1181_RS00685 0.68 -0.1 155,471 - HMPREF1181_RS00685 0.68 +0.5 155,471 - HMPREF1181_RS00685 0.68 +0.6 155,475 - HMPREF1181_RS00685 0.68 -0.7 155,479 + HMPREF1181_RS00685 0.68 -0.2 155,479 + HMPREF1181_RS00685 0.68 +0.1 155,518 + HMPREF1181_RS00685 0.70 -0.2 155,524 - HMPREF1181_RS00685 0.70 -0.3 155,539 - HMPREF1181_RS00685 0.71 -0.7 155,616 - HMPREF1181_RS00685 0.74 +0.6 155,670 + HMPREF1181_RS00685 0.76 +1.0 155,671 - HMPREF1181_RS00685 0.76 -0.3 155,838 - HMPREF1181_RS00685 0.83 -0.1 155,838 - HMPREF1181_RS00685 0.83 -0.1 155,857 + HMPREF1181_RS00685 0.84 -0.2 155,931 - HMPREF1181_RS00685 0.87 -0.7 156,006 + HMPREF1181_RS00685 0.90 -0.3 156,032 + +0.1 156,084 + -0.4 156,084 + +0.3 156,152 + -0.8 156,152 + -0.6 156,153 - -0.1 156,259 + -0.7 156,260 - +0.3 156,260 - -0.1 156,291 + -0.8 156,292 - +0.5 156,305 + -1.3 156,305 + -1.6 156,320 + -1.2 156,331 - +0.3 156,332 + +0.3 156,340 - +0.3 156,383 + -1.0 156,384 - -0.6 156,748 + HMPREF1181_RS00695 0.13 +1.0 156,749 - HMPREF1181_RS00695 0.14 +0.6 156,770 - HMPREF1181_RS00695 0.17 +1.3 156,894 - HMPREF1181_RS00695 0.39 +0.3 156,975 - HMPREF1181_RS00695 0.54 -0.2 157,018 + HMPREF1181_RS00695 0.61 -0.6 157,019 - HMPREF1181_RS00695 0.62 +0.2 157,019 - HMPREF1181_RS00695 0.62 -1.7 157,214 + -0.1 157,217 - +0.4 157,236 - +0.6
Or see this region's nucleotide sequence