Experiment: marine_broth_2216 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS00925 and HMPREF1181_RS00930 are separated by 51 nucleotides HMPREF1181_RS00930 and HMPREF1181_RS00935 are separated by 32 nucleotides HMPREF1181_RS00935 and HMPREF1181_RS00940 are separated by 149 nucleotides HMPREF1181_RS00940 and HMPREF1181_RS00945 are separated by 41 nucleotides
HMPREF1181_RS00925: HMPREF1181_RS00925 - RNA polymerase factor sigma-54, at 211,666 to 213,156
_RS00925
HMPREF1181_RS00930: HMPREF1181_RS00930 - hypothetical protein, at 213,208 to 213,885
_RS00930
HMPREF1181_RS00935: HMPREF1181_RS00935 - glycine cleavage system protein GcvH, at 213,918 to 214,298
_RS00935
HMPREF1181_RS00940: HMPREF1181_RS00940 - 5-(carboxyamino)imidazole ribonucleotide mutase, at 214,448 to 214,957
_RS00940
HMPREF1181_RS00945: HMPREF1181_RS00945 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 214,999 to 216,858
_RS00945
Position (kb) 213
214
215 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 213.215 kb on + strand at 213.228 kb on + strand at 213.355 kb on + strand, within HMPREF1181_RS00930 at 213.355 kb on + strand, within HMPREF1181_RS00930 at 213.382 kb on + strand, within HMPREF1181_RS00930 at 213.399 kb on + strand, within HMPREF1181_RS00930 at 213.508 kb on + strand, within HMPREF1181_RS00930 at 213.508 kb on + strand, within HMPREF1181_RS00930 at 213.659 kb on + strand, within HMPREF1181_RS00930 at 213.659 kb on + strand, within HMPREF1181_RS00930 at 213.788 kb on + strand, within HMPREF1181_RS00930 at 213.883 kb on + strand at 213.883 kb on + strand at 213.910 kb on + strand at 213.937 kb on + strand at 213.937 kb on + strand at 213.982 kb on + strand, within HMPREF1181_RS00935 at 213.987 kb on + strand, within HMPREF1181_RS00935 at 214.028 kb on + strand, within HMPREF1181_RS00935 at 214.033 kb on + strand, within HMPREF1181_RS00935 at 214.324 kb on + strand at 214.337 kb on + strand at 214.621 kb on + strand, within HMPREF1181_RS00940 at 214.877 kb on + strand, within HMPREF1181_RS00940
Per-strain Table
Position Strand Gene LocusTag Fraction marine_broth_2216 1 x (C) complex media remove 213,215 + -0.0 213,228 + -0.3 213,355 + HMPREF1181_RS00930 0.22 -0.5 213,355 + HMPREF1181_RS00930 0.22 -0.2 213,382 + HMPREF1181_RS00930 0.26 +1.5 213,399 + HMPREF1181_RS00930 0.28 -0.4 213,508 + HMPREF1181_RS00930 0.44 +1.1 213,508 + HMPREF1181_RS00930 0.44 -1.2 213,659 + HMPREF1181_RS00930 0.67 -0.9 213,659 + HMPREF1181_RS00930 0.67 -0.7 213,788 + HMPREF1181_RS00930 0.86 -1.1 213,883 + -0.5 213,883 + +1.3 213,910 + -1.3 213,937 + -1.4 213,937 + -1.3 213,982 + HMPREF1181_RS00935 0.17 -1.9 213,987 + HMPREF1181_RS00935 0.18 -2.8 214,028 + HMPREF1181_RS00935 0.29 -1.3 214,033 + HMPREF1181_RS00935 0.30 -1.5 214,324 + -0.3 214,337 + +0.1 214,621 + HMPREF1181_RS00940 0.34 +0.3 214,877 + HMPREF1181_RS00940 0.84 -0.5
Or see this region's nucleotide sequence