Experiment: Pectin from apple; filtered 1 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1181_RS04045 and HMPREF1181_RS04050 are separated by 292 nucleotides HMPREF1181_RS04050 and HMPREF1181_RS04055 are separated by 339 nucleotides HMPREF1181_RS04055 and HMPREF1181_RS04060 are separated by 13 nucleotides
HMPREF1181_RS04045: HMPREF1181_RS04045 - CPBP family intramembrane metalloprotease, at 48,519 to 49,373
_RS04045
HMPREF1181_RS04050: HMPREF1181_RS04050 - ATP-binding cassette domain-containing protein, at 49,666 to 51,282
_RS04050
HMPREF1181_RS04055: HMPREF1181_RS04055 - nucleotide exchange factor GrpE, at 51,622 to 52,242
_RS04055
HMPREF1181_RS04060: HMPREF1181_RS04060 - molecular chaperone DnaJ, at 52,256 to 53,437
_RS04060
Position (kb) 49
50
51
52 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 48.681 kb on + strand, within HMPREF1181_RS04045 at 48.682 kb on - strand, within HMPREF1181_RS04045 at 48.719 kb on - strand, within HMPREF1181_RS04045 at 48.737 kb on - strand, within HMPREF1181_RS04045 at 48.817 kb on + strand, within HMPREF1181_RS04045 at 48.818 kb on - strand, within HMPREF1181_RS04045 at 48.857 kb on - strand, within HMPREF1181_RS04045 at 48.928 kb on + strand, within HMPREF1181_RS04045 at 48.928 kb on + strand, within HMPREF1181_RS04045 at 48.929 kb on - strand, within HMPREF1181_RS04045 at 49.010 kb on + strand, within HMPREF1181_RS04045 at 49.058 kb on + strand, within HMPREF1181_RS04045 at 49.058 kb on + strand, within HMPREF1181_RS04045 at 49.060 kb on + strand, within HMPREF1181_RS04045 at 49.060 kb on + strand, within HMPREF1181_RS04045 at 49.100 kb on - strand, within HMPREF1181_RS04045 at 49.131 kb on + strand, within HMPREF1181_RS04045 at 49.132 kb on - strand, within HMPREF1181_RS04045 at 49.133 kb on + strand, within HMPREF1181_RS04045 at 49.134 kb on - strand, within HMPREF1181_RS04045 at 49.135 kb on + strand, within HMPREF1181_RS04045 at 49.135 kb on + strand, within HMPREF1181_RS04045 at 49.136 kb on - strand, within HMPREF1181_RS04045 at 49.136 kb on - strand, within HMPREF1181_RS04045 at 49.136 kb on - strand, within HMPREF1181_RS04045 at 49.136 kb on - strand, within HMPREF1181_RS04045 at 49.137 kb on + strand, within HMPREF1181_RS04045 at 49.138 kb on - strand, within HMPREF1181_RS04045 at 49.138 kb on - strand, within HMPREF1181_RS04045 at 49.168 kb on + strand, within HMPREF1181_RS04045 at 49.168 kb on + strand, within HMPREF1181_RS04045 at 49.277 kb on - strand, within HMPREF1181_RS04045 at 49.310 kb on - strand at 49.310 kb on - strand at 49.472 kb on + strand at 49.522 kb on + strand at 49.523 kb on - strand at 49.525 kb on - strand at 49.542 kb on + strand at 49.543 kb on - strand at 49.543 kb on - strand at 49.560 kb on + strand at 49.595 kb on + strand at 49.601 kb on - strand at 49.604 kb on - strand at 49.604 kb on - strand at 49.604 kb on - strand at 49.607 kb on - strand at 49.671 kb on + strand at 49.671 kb on + strand at 49.672 kb on - strand at 49.718 kb on - strand at 49.972 kb on + strand, within HMPREF1181_RS04050 at 50.014 kb on - strand, within HMPREF1181_RS04050 at 50.034 kb on + strand, within HMPREF1181_RS04050 at 50.034 kb on + strand, within HMPREF1181_RS04050 at 50.035 kb on - strand, within HMPREF1181_RS04050 at 50.038 kb on + strand, within HMPREF1181_RS04050 at 50.038 kb on + strand, within HMPREF1181_RS04050 at 50.038 kb on + strand, within HMPREF1181_RS04050 at 50.094 kb on + strand, within HMPREF1181_RS04050 at 50.123 kb on + strand, within HMPREF1181_RS04050 at 50.124 kb on - strand, within HMPREF1181_RS04050 at 50.124 kb on - strand, within HMPREF1181_RS04050 at 50.175 kb on + strand, within HMPREF1181_RS04050 at 50.175 kb on + strand, within HMPREF1181_RS04050 at 50.176 kb on - strand, within HMPREF1181_RS04050 at 50.176 kb on - strand, within HMPREF1181_RS04050 at 50.574 kb on - strand, within HMPREF1181_RS04050 at 50.574 kb on - strand, within HMPREF1181_RS04050 at 50.694 kb on - strand, within HMPREF1181_RS04050 at 50.711 kb on - strand, within HMPREF1181_RS04050 at 50.771 kb on + strand, within HMPREF1181_RS04050 at 50.772 kb on - strand, within HMPREF1181_RS04050 at 50.834 kb on + strand, within HMPREF1181_RS04050 at 50.834 kb on + strand, within HMPREF1181_RS04050 at 50.835 kb on - strand, within HMPREF1181_RS04050 at 50.975 kb on + strand, within HMPREF1181_RS04050 at 50.997 kb on + strand, within HMPREF1181_RS04050 at 51.108 kb on + strand, within HMPREF1181_RS04050 at 51.109 kb on - strand, within HMPREF1181_RS04050 at 51.109 kb on - strand, within HMPREF1181_RS04050 at 51.112 kb on - strand, within HMPREF1181_RS04050 at 51.144 kb on + strand at 51.144 kb on + strand at 51.147 kb on + strand at 51.188 kb on - strand at 51.190 kb on - strand at 51.190 kb on - strand at 51.190 kb on - strand at 51.224 kb on - strand at 51.246 kb on + strand at 51.262 kb on + strand at 51.277 kb on - strand at 51.287 kb on - strand at 51.301 kb on - strand at 51.301 kb on - strand at 51.308 kb on - strand at 51.308 kb on - strand at 51.311 kb on - strand at 51.311 kb on - strand at 51.311 kb on - strand at 51.328 kb on + strand at 51.330 kb on + strand at 51.365 kb on - strand at 51.383 kb on - strand at 51.408 kb on - strand at 51.462 kb on - strand at 51.462 kb on - strand at 51.467 kb on - strand at 51.491 kb on + strand at 51.492 kb on - strand at 51.505 kb on + strand at 51.523 kb on + strand at 51.598 kb on + strand at 51.601 kb on + strand at 51.657 kb on + strand at 51.657 kb on + strand at 52.245 kb on + strand at 52.253 kb on + strand at 52.253 kb on + strand at 52.253 kb on + strand at 52.253 kb on + strand at 52.253 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Pectin from apple; filtered 1 mg/mL (C) remove 48,681 + HMPREF1181_RS04045 0.19 -1.0 48,682 - HMPREF1181_RS04045 0.19 +0.9 48,719 - HMPREF1181_RS04045 0.23 +0.1 48,737 - HMPREF1181_RS04045 0.25 +0.6 48,817 + HMPREF1181_RS04045 0.35 -0.1 48,818 - HMPREF1181_RS04045 0.35 -0.2 48,857 - HMPREF1181_RS04045 0.40 +1.0 48,928 + HMPREF1181_RS04045 0.48 -0.3 48,928 + HMPREF1181_RS04045 0.48 +0.5 48,929 - HMPREF1181_RS04045 0.48 -0.0 49,010 + HMPREF1181_RS04045 0.57 -0.2 49,058 + HMPREF1181_RS04045 0.63 +0.6 49,058 + HMPREF1181_RS04045 0.63 +0.2 49,060 + HMPREF1181_RS04045 0.63 -0.1 49,060 + HMPREF1181_RS04045 0.63 -0.9 49,100 - HMPREF1181_RS04045 0.68 +0.0 49,131 + HMPREF1181_RS04045 0.72 +1.4 49,132 - HMPREF1181_RS04045 0.72 -0.2 49,133 + HMPREF1181_RS04045 0.72 -1.3 49,134 - HMPREF1181_RS04045 0.72 -1.1 49,135 + HMPREF1181_RS04045 0.72 -1.0 49,135 + HMPREF1181_RS04045 0.72 -0.1 49,136 - HMPREF1181_RS04045 0.72 -1.0 49,136 - HMPREF1181_RS04045 0.72 +0.9 49,136 - HMPREF1181_RS04045 0.72 -0.1 49,136 - HMPREF1181_RS04045 0.72 +1.0 49,137 + HMPREF1181_RS04045 0.72 -1.0 49,138 - HMPREF1181_RS04045 0.72 +1.2 49,138 - HMPREF1181_RS04045 0.72 +1.2 49,168 + HMPREF1181_RS04045 0.76 -1.3 49,168 + HMPREF1181_RS04045 0.76 -0.5 49,277 - HMPREF1181_RS04045 0.89 -1.6 49,310 - +0.8 49,310 - -0.6 49,472 + +0.7 49,522 + -1.2 49,523 - +0.4 49,525 - +1.0 49,542 + -1.7 49,543 - +0.2 49,543 - -0.4 49,560 + -0.6 49,595 + +1.2 49,601 - +0.6 49,604 - -0.2 49,604 - +1.0 49,604 - +1.2 49,607 - +0.7 49,671 + -0.8 49,671 + -0.5 49,672 - +1.5 49,718 - -0.1 49,972 + HMPREF1181_RS04050 0.19 +1.0 50,014 - HMPREF1181_RS04050 0.22 +2.0 50,034 + HMPREF1181_RS04050 0.23 -1.4 50,034 + HMPREF1181_RS04050 0.23 +1.8 50,035 - HMPREF1181_RS04050 0.23 +0.3 50,038 + HMPREF1181_RS04050 0.23 -0.1 50,038 + HMPREF1181_RS04050 0.23 -0.8 50,038 + HMPREF1181_RS04050 0.23 -0.1 50,094 + HMPREF1181_RS04050 0.26 -1.1 50,123 + HMPREF1181_RS04050 0.28 +1.2 50,124 - HMPREF1181_RS04050 0.28 -0.9 50,124 - HMPREF1181_RS04050 0.28 +1.2 50,175 + HMPREF1181_RS04050 0.31 -1.1 50,175 + HMPREF1181_RS04050 0.31 +2.2 50,176 - HMPREF1181_RS04050 0.32 -1.9 50,176 - HMPREF1181_RS04050 0.32 -0.8 50,574 - HMPREF1181_RS04050 0.56 +0.1 50,574 - HMPREF1181_RS04050 0.56 +1.5 50,694 - HMPREF1181_RS04050 0.64 +0.2 50,711 - HMPREF1181_RS04050 0.65 +0.2 50,771 + HMPREF1181_RS04050 0.68 +0.7 50,772 - HMPREF1181_RS04050 0.68 -0.9 50,834 + HMPREF1181_RS04050 0.72 -0.1 50,834 + HMPREF1181_RS04050 0.72 +0.2 50,835 - HMPREF1181_RS04050 0.72 -0.4 50,975 + HMPREF1181_RS04050 0.81 +0.3 50,997 + HMPREF1181_RS04050 0.82 +0.2 51,108 + HMPREF1181_RS04050 0.89 +1.1 51,109 - HMPREF1181_RS04050 0.89 +0.1 51,109 - HMPREF1181_RS04050 0.89 +0.8 51,112 - HMPREF1181_RS04050 0.89 -0.5 51,144 + +1.8 51,144 + -2.1 51,147 + -1.3 51,188 - +0.9 51,190 - -0.1 51,190 - +0.9 51,190 - +2.8 51,224 - +0.6 51,246 + +1.2 51,262 + +0.5 51,277 - +1.0 51,287 - +1.1 51,301 - -0.8 51,301 - -0.3 51,308 - -0.3 51,308 - -0.2 51,311 - +0.0 51,311 - +0.7 51,311 - +1.2 51,328 + -1.4 51,330 + -1.3 51,365 - -0.2 51,383 - +0.0 51,408 - +2.2 51,462 - -1.6 51,462 - -0.5 51,467 - -0.8 51,491 + -0.5 51,492 - +1.0 51,505 + +1.2 51,523 + -1.2 51,598 + +0.5 51,601 + -0.3 51,657 + +0.1 51,657 + +1.3 52,245 + +0.2 52,253 + +0.2 52,253 + -0.1 52,253 + +0.3 52,253 + +1.2 52,253 + +0.1
Or see this region's nucleotide sequence