Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS23805

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
4,540,510	-		LU632_RS23795	0.61	+5.2
4,540,760	+		LU632_RS23795	0.82	-2.5
4,540,761	-		LU632_RS23795	0.82	+1.7
4,540,761	-		LU632_RS23795	0.82	+2.6
4,540,847	+		LU632_RS23795	0.89	+0.1
4,540,847	+		LU632_RS23795	0.89	+0.7
4,540,848	-		LU632_RS23795	0.89	-0.6
4,540,848	-		LU632_RS23795	0.89	-1.0
4,540,898	-				-2.4
4,540,907	+				-0.3
4,540,922	-				+0.7
4,540,922	-				-0.3
4,540,985	+				+0.5
4,540,985	+				-1.3
4,541,122	+		LU632_RS23800	0.42	+4.7
4,541,122	+		LU632_RS23800	0.42	+1.1
4,541,122	+		LU632_RS23800	0.42	+0.1
4,541,123	-		LU632_RS23800	0.42	-1.3
4,541,125	+		LU632_RS23800	0.43	+0.2
4,541,126	-		LU632_RS23800	0.43	+1.5
4,541,135	+		LU632_RS23800	0.45	+0.3
4,541,135	+		LU632_RS23800	0.45	-0.8
4,541,136	-		LU632_RS23800	0.46	-1.6
4,541,136	-		LU632_RS23800	0.46	+1.7
4,541,136	-		LU632_RS23800	0.46	+0.9
4,541,137	+		LU632_RS23800	0.46	+0.7
4,541,495	-		LU632_RS23805	0.23	+0.2
4,541,578	+		LU632_RS23805	0.34	+1.9
4,541,627	+		LU632_RS23805	0.40	-1.3
4,541,628	-		LU632_RS23805	0.41	-1.2
4,541,628	-		LU632_RS23805	0.41	-0.6
4,541,628	-		LU632_RS23805	0.41	+2.0
4,541,628	-		LU632_RS23805	0.41	-0.8
4,541,705	+		LU632_RS23805	0.51	-0.8
4,541,767	+		LU632_RS23805	0.59	+1.5
4,542,078	-				+0.4
4,542,078	-				+0.0
4,542,148	-				+0.4
4,542,149	+				+0.9
4,542,149	+				+0.2
4,542,149	+				+1.6
4,542,150	-				-0.4
4,542,150	-				-0.3
4,542,150	-				+0.2
4,542,150	-				+0.4
4,542,150	-				-1.0
4,542,150	-				-3.7
4,542,150	-				-0.2
4,542,199	-		LU632_RS23810	0.13	+2.1
4,542,199	-		LU632_RS23810	0.13	+2.5
4,542,200	+		LU632_RS23810	0.13	-1.8
4,542,200	+		LU632_RS23810	0.13	+0.6
4,542,200	+		LU632_RS23810	0.13	-0.7
4,542,201	-		LU632_RS23810	0.13	-0.1
4,542,201	-		LU632_RS23810	0.13	-1.8
4,542,201	-		LU632_RS23810	0.13	-1.8
4,542,372	+		LU632_RS23810	0.30	-1.3
4,542,375	+		LU632_RS23810	0.30	-0.2
4,542,476	+		LU632_RS23810	0.41	+0.1
4,542,476	+		LU632_RS23810	0.41	+2.7
4,542,476	+		LU632_RS23810	0.41	-1.6
4,542,476	+		LU632_RS23810	0.41	+4.5
4,542,477	-		LU632_RS23810	0.41	+0.5
4,542,477	-		LU632_RS23810	0.41	+0.7
4,542,477	-		LU632_RS23810	0.41	-0.9
4,542,477	-		LU632_RS23810	0.41	-1.1
4,542,477	-		LU632_RS23810	0.41	-0.3
4,542,480	+		LU632_RS23810	0.41	-0.3
4,542,480	+		LU632_RS23810	0.41	+0.4
4,542,480	+		LU632_RS23810	0.41	-2.3
4,542,480	+		LU632_RS23810	0.41	-0.8
4,542,481	-		LU632_RS23810	0.41	-2.4
4,542,514	-		LU632_RS23810	0.45	+1.4
4,542,515	+		LU632_RS23810	0.45	+1.4
4,542,515	+		LU632_RS23810	0.45	-2.1
4,542,515	+		LU632_RS23810	0.45	-0.8
4,542,516	-		LU632_RS23810	0.45	-1.2
4,542,516	-		LU632_RS23810	0.45	-0.0
4,542,516	-		LU632_RS23810	0.45	+0.7
4,542,709	-		LU632_RS23810	0.65	+1.2
4,542,757	-		LU632_RS23810	0.69	-0.7
4,542,800	+		LU632_RS23810	0.74	-0.9
4,542,830	+		LU632_RS23810	0.77	+0.7
4,542,925	+		LU632_RS23810	0.87	+3.5
4,542,926	-		LU632_RS23810	0.87	+0.4
4,542,963	+				+0.0
4,542,963	+				+0.7
4,542,963	+				+0.3
4,542,963	+				+1.3
4,542,964	-				+1.4
4,542,964	-				-1.8
4,542,964	-				-1.1
4,542,964	-				-0.1
4,542,964	-				+2.3
4,542,964	-				+3.0
4,542,964	-				+2.1
4,542,973	-				-1.4