Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22790 and LU632_RS22795 are separated by 29 nucleotides LU632_RS22795 and crp are separated by 310 nucleotides
LU632_RS22790: LU632_RS22790 - phosphoribulokinase, at 4,338,464 to 4,339,333
_RS22790
LU632_RS22795: LU632_RS22795 - OsmC family protein, at 4,339,363 to 4,339,770
_RS22795
LU632_RS22800: crp - cAMP-activated global transcriptional regulator CRP, at 4,340,081 to 4,340,713
crp
Position (kb) 4339
4340 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 4338.418 kb on - strand at 4338.457 kb on + strand at 4338.463 kb on + strand at 4338.464 kb on - strand at 4338.464 kb on - strand at 4338.464 kb on - strand at 4338.629 kb on - strand, within LU632_RS22790 at 4338.635 kb on - strand, within LU632_RS22790 at 4338.719 kb on + strand, within LU632_RS22790 at 4338.719 kb on + strand, within LU632_RS22790 at 4338.719 kb on + strand, within LU632_RS22790 at 4338.752 kb on + strand, within LU632_RS22790 at 4338.752 kb on + strand, within LU632_RS22790 at 4338.753 kb on - strand, within LU632_RS22790 at 4338.761 kb on - strand, within LU632_RS22790 at 4338.848 kb on + strand, within LU632_RS22790 at 4338.924 kb on + strand, within LU632_RS22790 at 4338.925 kb on - strand, within LU632_RS22790 at 4338.929 kb on - strand, within LU632_RS22790 at 4338.929 kb on - strand, within LU632_RS22790 at 4338.929 kb on - strand, within LU632_RS22790 at 4338.934 kb on + strand, within LU632_RS22790 at 4339.031 kb on + strand, within LU632_RS22790 at 4339.031 kb on + strand, within LU632_RS22790 at 4339.032 kb on - strand, within LU632_RS22790 at 4339.033 kb on + strand, within LU632_RS22790 at 4339.033 kb on + strand, within LU632_RS22790 at 4339.033 kb on + strand, within LU632_RS22790 at 4339.034 kb on - strand, within LU632_RS22790 at 4339.100 kb on - strand, within LU632_RS22790 at 4339.100 kb on - strand, within LU632_RS22790 at 4339.358 kb on + strand at 4339.429 kb on - strand, within LU632_RS22795 at 4339.433 kb on + strand, within LU632_RS22795 at 4339.433 kb on + strand, within LU632_RS22795 at 4339.433 kb on + strand, within LU632_RS22795 at 4339.434 kb on - strand, within LU632_RS22795 at 4339.434 kb on - strand, within LU632_RS22795 at 4339.702 kb on + strand, within LU632_RS22795 at 4339.756 kb on - strand at 4339.756 kb on - strand at 4339.818 kb on - strand at 4339.849 kb on + strand at 4339.850 kb on - strand at 4340.736 kb on + strand at 4340.737 kb on - strand at 4340.755 kb on + strand at 4340.762 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 4,338,418 - -1.6 4,338,457 + +1.9 4,338,463 + +0.9 4,338,464 - +2.9 4,338,464 - +1.0 4,338,464 - +1.1 4,338,629 - LU632_RS22790 0.19 +3.9 4,338,635 - LU632_RS22790 0.20 +3.0 4,338,719 + LU632_RS22790 0.29 +3.8 4,338,719 + LU632_RS22790 0.29 +1.1 4,338,719 + LU632_RS22790 0.29 -2.3 4,338,752 + LU632_RS22790 0.33 +2.8 4,338,752 + LU632_RS22790 0.33 +3.0 4,338,753 - LU632_RS22790 0.33 +2.0 4,338,761 - LU632_RS22790 0.34 -0.3 4,338,848 + LU632_RS22790 0.44 +2.4 4,338,924 + LU632_RS22790 0.53 +1.3 4,338,925 - LU632_RS22790 0.53 +3.0 4,338,929 - LU632_RS22790 0.53 +3.2 4,338,929 - LU632_RS22790 0.53 +2.5 4,338,929 - LU632_RS22790 0.53 +1.6 4,338,934 + LU632_RS22790 0.54 -0.9 4,339,031 + LU632_RS22790 0.65 +6.8 4,339,031 + LU632_RS22790 0.65 -1.9 4,339,032 - LU632_RS22790 0.65 +3.2 4,339,033 + LU632_RS22790 0.65 +1.4 4,339,033 + LU632_RS22790 0.65 +2.7 4,339,033 + LU632_RS22790 0.65 +2.8 4,339,034 - LU632_RS22790 0.66 +2.1 4,339,100 - LU632_RS22790 0.73 -0.3 4,339,100 - LU632_RS22790 0.73 +3.4 4,339,358 + -3.2 4,339,429 - LU632_RS22795 0.16 -2.2 4,339,433 + LU632_RS22795 0.17 +0.9 4,339,433 + LU632_RS22795 0.17 +1.7 4,339,433 + LU632_RS22795 0.17 -0.1 4,339,434 - LU632_RS22795 0.17 +2.5 4,339,434 - LU632_RS22795 0.17 +1.7 4,339,702 + LU632_RS22795 0.83 -1.4 4,339,756 - -0.1 4,339,756 - -0.6 4,339,818 - +0.2 4,339,849 + +3.3 4,339,850 - +0.7 4,340,736 + -0.7 4,340,737 - -1.9 4,340,755 + -3.4 4,340,762 + +0.4
Or see this region's nucleotide sequence