Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS22720 and slyD are separated by 130 nucleotides slyD and LU632_RS22730 are separated by 136 nucleotides LU632_RS22730 and kefB are separated by 8 nucleotides
LU632_RS22720: LU632_RS22720 - SlyX family protein, at 4,325,758 to 4,325,973
_RS22720
LU632_RS22725: slyD - peptidylprolyl isomerase, at 4,326,104 to 4,326,625
slyD
LU632_RS22730: LU632_RS22730 - YheV family putative metal-binding protein, at 4,326,762 to 4,326,956
_RS22730
LU632_RS22735: kefB - glutathione-regulated potassium-efflux system protein KefB, at 4,326,965 to 4,328,770
kefB
Position (kb) 4326
4327 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 4325.847 kb on + strand, within LU632_RS22720 at 4325.847 kb on + strand, within LU632_RS22720 at 4325.847 kb on + strand, within LU632_RS22720 at 4325.848 kb on - strand, within LU632_RS22720 at 4325.888 kb on + strand, within LU632_RS22720 at 4325.968 kb on + strand at 4325.969 kb on - strand at 4325.972 kb on - strand at 4325.972 kb on - strand at 4326.016 kb on - strand at 4326.236 kb on - strand, within slyD at 4326.236 kb on - strand, within slyD at 4326.299 kb on + strand, within slyD at 4326.423 kb on + strand, within slyD at 4326.497 kb on + strand, within slyD at 4326.498 kb on - strand, within slyD at 4326.543 kb on - strand, within slyD at 4326.577 kb on + strand at 4326.589 kb on - strand at 4326.629 kb on + strand at 4326.630 kb on - strand at 4326.730 kb on - strand at 4327.108 kb on + strand at 4327.108 kb on + strand at 4327.108 kb on + strand at 4327.108 kb on + strand at 4327.108 kb on + strand at 4327.108 kb on + strand at 4327.108 kb on + strand at 4327.108 kb on + strand at 4327.108 kb on + strand at 4327.108 kb on + strand at 4327.108 kb on + strand at 4327.109 kb on - strand at 4327.109 kb on - strand at 4327.109 kb on - strand at 4327.109 kb on - strand at 4327.109 kb on - strand at 4327.351 kb on + strand, within kefB at 4327.401 kb on - strand, within kefB at 4327.441 kb on - strand, within kefB at 4327.446 kb on + strand, within kefB at 4327.451 kb on - strand, within kefB at 4327.451 kb on - strand, within kefB at 4327.496 kb on - strand, within kefB at 4327.496 kb on - strand, within kefB at 4327.496 kb on - strand, within kefB at 4327.602 kb on + strand, within kefB at 4327.781 kb on - strand, within kefB at 4327.814 kb on - strand, within kefB at 4327.843 kb on - strand, within kefB at 4327.878 kb on - strand, within kefB at 4327.888 kb on + strand, within kefB at 4327.906 kb on + strand, within kefB at 4327.908 kb on + strand, within kefB at 4327.908 kb on + strand, within kefB at 4327.908 kb on + strand, within kefB at 4327.909 kb on - strand, within kefB at 4327.909 kb on - strand, within kefB
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 4,325,847 + LU632_RS22720 0.41 -0.1 4,325,847 + LU632_RS22720 0.41 -3.1 4,325,847 + LU632_RS22720 0.41 -2.5 4,325,848 - LU632_RS22720 0.42 -1.3 4,325,888 + LU632_RS22720 0.60 -0.9 4,325,968 + +0.2 4,325,969 - +0.1 4,325,972 - +0.7 4,325,972 - +0.1 4,326,016 - +2.1 4,326,236 - slyD LU632_RS22725 0.25 -3.6 4,326,236 - slyD LU632_RS22725 0.25 -0.9 4,326,299 + slyD LU632_RS22725 0.37 -0.2 4,326,423 + slyD LU632_RS22725 0.61 -0.1 4,326,497 + slyD LU632_RS22725 0.75 +2.9 4,326,498 - slyD LU632_RS22725 0.75 +0.2 4,326,543 - slyD LU632_RS22725 0.84 -0.4 4,326,577 + +0.3 4,326,589 - -0.1 4,326,629 + -0.5 4,326,630 - +0.4 4,326,730 - +1.6 4,327,108 + -1.1 4,327,108 + +0.4 4,327,108 + +0.5 4,327,108 + -1.9 4,327,108 + -0.9 4,327,108 + -0.2 4,327,108 + -0.9 4,327,108 + -3.1 4,327,108 + +1.1 4,327,108 + +0.3 4,327,108 + +2.8 4,327,109 - +1.6 4,327,109 - +0.4 4,327,109 - -2.3 4,327,109 - +0.4 4,327,109 - +2.2 4,327,351 + kefB LU632_RS22735 0.21 +0.0 4,327,401 - kefB LU632_RS22735 0.24 -1.9 4,327,441 - kefB LU632_RS22735 0.26 +0.5 4,327,446 + kefB LU632_RS22735 0.27 +0.4 4,327,451 - kefB LU632_RS22735 0.27 -0.4 4,327,451 - kefB LU632_RS22735 0.27 +2.3 4,327,496 - kefB LU632_RS22735 0.29 +5.7 4,327,496 - kefB LU632_RS22735 0.29 +0.0 4,327,496 - kefB LU632_RS22735 0.29 -0.4 4,327,602 + kefB LU632_RS22735 0.35 -0.7 4,327,781 - kefB LU632_RS22735 0.45 +0.9 4,327,814 - kefB LU632_RS22735 0.47 -0.4 4,327,843 - kefB LU632_RS22735 0.49 -1.3 4,327,878 - kefB LU632_RS22735 0.51 +2.8 4,327,888 + kefB LU632_RS22735 0.51 +0.4 4,327,906 + kefB LU632_RS22735 0.52 +1.1 4,327,908 + kefB LU632_RS22735 0.52 +1.2 4,327,908 + kefB LU632_RS22735 0.52 -0.9 4,327,908 + kefB LU632_RS22735 0.52 +3.6 4,327,909 - kefB LU632_RS22735 0.52 +1.1 4,327,909 - kefB LU632_RS22735 0.52 -0.9
Or see this region's nucleotide sequence