Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ubiA and ubiC are separated by 1 nucleotides ubiC and psiE are separated by 141 nucleotides psiE and LU632_RS22345 are separated by 153 nucleotides
LU632_RS22330: ubiA - 4-hydroxybenzoate octaprenyltransferase, at 4,264,622 to 4,265,506
ubiA
LU632_RS22335: ubiC - chorismate lyase, at 4,265,508 to 4,266,035
ubiC
LU632_RS22340: psiE - phosphate-starvation-inducible protein PsiE, at 4,266,177 to 4,266,575
psiE
LU632_RS22345: LU632_RS22345 - YjbH domain-containing protein, at 4,266,729 to 4,268,825
_RS22345
Position (kb) 4265
4266
4267 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4264.624 kb on - strand at 4265.681 kb on - strand, within ubiC at 4265.704 kb on - strand, within ubiC at 4265.757 kb on - strand, within ubiC at 4265.797 kb on - strand, within ubiC at 4265.797 kb on - strand, within ubiC at 4265.797 kb on - strand, within ubiC at 4266.010 kb on - strand at 4266.071 kb on + strand at 4266.160 kb on - strand at 4266.178 kb on + strand at 4266.178 kb on + strand at 4266.218 kb on + strand, within psiE at 4266.377 kb on + strand, within psiE at 4266.414 kb on + strand, within psiE at 4266.424 kb on + strand, within psiE at 4266.424 kb on + strand, within psiE at 4266.450 kb on - strand, within psiE at 4266.453 kb on + strand, within psiE at 4266.454 kb on - strand, within psiE at 4266.464 kb on - strand, within psiE at 4266.473 kb on + strand, within psiE at 4266.492 kb on + strand, within psiE at 4266.492 kb on + strand, within psiE at 4266.543 kb on + strand at 4266.575 kb on + strand at 4266.576 kb on - strand at 4266.608 kb on + strand at 4266.608 kb on + strand at 4266.608 kb on + strand at 4266.609 kb on - strand at 4266.609 kb on - strand at 4266.625 kb on - strand at 4266.629 kb on + strand at 4266.761 kb on + strand at 4266.762 kb on - strand at 4266.762 kb on - strand at 4266.762 kb on - strand at 4266.766 kb on + strand at 4266.767 kb on - strand at 4266.767 kb on - strand at 4266.775 kb on + strand at 4266.779 kb on + strand at 4266.896 kb on + strand at 4266.985 kb on - strand, within LU632_RS22345 at 4267.018 kb on + strand, within LU632_RS22345 at 4267.019 kb on - strand, within LU632_RS22345
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 4,264,624 - -1.4 4,265,681 - ubiC LU632_RS22335 0.33 -2.1 4,265,704 - ubiC LU632_RS22335 0.37 -0.6 4,265,757 - ubiC LU632_RS22335 0.47 +0.4 4,265,797 - ubiC LU632_RS22335 0.55 -0.2 4,265,797 - ubiC LU632_RS22335 0.55 -1.7 4,265,797 - ubiC LU632_RS22335 0.55 -1.0 4,266,010 - +0.4 4,266,071 + -2.2 4,266,160 - -0.3 4,266,178 + +1.7 4,266,178 + -2.5 4,266,218 + psiE LU632_RS22340 0.10 -1.7 4,266,377 + psiE LU632_RS22340 0.50 -0.7 4,266,414 + psiE LU632_RS22340 0.59 +0.9 4,266,424 + psiE LU632_RS22340 0.62 +0.3 4,266,424 + psiE LU632_RS22340 0.62 -1.3 4,266,450 - psiE LU632_RS22340 0.68 -1.2 4,266,453 + psiE LU632_RS22340 0.69 -0.8 4,266,454 - psiE LU632_RS22340 0.69 -1.9 4,266,464 - psiE LU632_RS22340 0.72 +0.9 4,266,473 + psiE LU632_RS22340 0.74 -0.3 4,266,492 + psiE LU632_RS22340 0.79 -1.7 4,266,492 + psiE LU632_RS22340 0.79 +0.1 4,266,543 + +0.8 4,266,575 + +2.3 4,266,576 - -1.1 4,266,608 + -0.6 4,266,608 + -0.9 4,266,608 + -1.3 4,266,609 - -2.8 4,266,609 - -1.2 4,266,625 - -1.1 4,266,629 + +0.7 4,266,761 + +0.1 4,266,762 - +0.7 4,266,762 - -1.3 4,266,762 - +1.0 4,266,766 + +1.1 4,266,767 - -0.0 4,266,767 - -0.4 4,266,775 + -0.4 4,266,779 + -0.3 4,266,896 + +0.1 4,266,985 - LU632_RS22345 0.12 +0.7 4,267,018 + LU632_RS22345 0.14 +1.9 4,267,019 - LU632_RS22345 0.14 -1.5
Or see this region's nucleotide sequence