Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS22245

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLU632_RS22235 and LU632_RS22240 overlap by 11 nucleotidesLU632_RS22240 and LU632_RS22245 are separated by 49 nucleotidesLU632_RS22245 and LU632_RS22250 are separated by 482 nucleotidesLU632_RS22250 and LU632_RS22255 are separated by 110 nucleotides LU632_RS22235: LU632_RS22235 - AzlC family ABC transporter permease, at 4,251,669 to 4,252,367 _RS22235 LU632_RS22240: LU632_RS22240 - AzlD domain-containing protein, at 4,252,357 to 4,252,707 _RS22240 LU632_RS22245: LU632_RS22245 - hypothetical protein, at 4,252,757 to 4,252,981 _RS22245 LU632_RS22250: LU632_RS22250 - helix-turn-helix domain-containing protein, at 4,253,464 to 4,253,715 _RS22250 LU632_RS22255: LU632_RS22255 - helix-turn-helix domain-containing protein, at 4,253,826 to 4,254,101 _RS22255 Position (kb) 4252 4253Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4251.835 kb on + strand, within LU632_RS22235at 4251.836 kb on - strand, within LU632_RS22235at 4251.871 kb on - strand, within LU632_RS22235at 4251.916 kb on + strand, within LU632_RS22235at 4251.916 kb on + strand, within LU632_RS22235at 4251.917 kb on - strand, within LU632_RS22235at 4251.917 kb on - strand, within LU632_RS22235at 4251.917 kb on - strand, within LU632_RS22235at 4251.917 kb on - strand, within LU632_RS22235at 4251.918 kb on + strand, within LU632_RS22235at 4251.918 kb on + strand, within LU632_RS22235at 4251.919 kb on - strand, within LU632_RS22235at 4251.919 kb on - strand, within LU632_RS22235at 4251.919 kb on - strand, within LU632_RS22235at 4251.919 kb on - strand, within LU632_RS22235at 4251.919 kb on - strand, within LU632_RS22235at 4251.919 kb on - strand, within LU632_RS22235at 4251.919 kb on - strand, within LU632_RS22235at 4251.919 kb on - strand, within LU632_RS22235at 4251.919 kb on - strand, within LU632_RS22235at 4252.073 kb on - strand, within LU632_RS22235at 4252.081 kb on - strand, within LU632_RS22235at 4252.133 kb on - strand, within LU632_RS22235at 4252.269 kb on + strand, within LU632_RS22235at 4252.282 kb on + strand, within LU632_RS22235at 4252.283 kb on - strand, within LU632_RS22235at 4252.356 kb on + strandat 4252.356 kb on + strandat 4252.356 kb on + strandat 4252.357 kb on - strandat 4252.357 kb on - strandat 4252.431 kb on + strand, within LU632_RS22240at 4252.431 kb on + strand, within LU632_RS22240at 4252.539 kb on + strand, within LU632_RS22240at 4252.586 kb on + strand, within LU632_RS22240at 4252.586 kb on + strand, within LU632_RS22240at 4252.587 kb on - strand, within LU632_RS22240at 4252.591 kb on + strand, within LU632_RS22240at 4252.604 kb on + strand, within LU632_RS22240at 4252.605 kb on - strand, within LU632_RS22240at 4252.608 kb on - strand, within LU632_RS22240at 4252.608 kb on - strand, within LU632_RS22240at 4252.611 kb on - strand, within LU632_RS22240at 4252.625 kb on + strand, within LU632_RS22240at 4252.625 kb on + strand, within LU632_RS22240at 4252.626 kb on - strand, within LU632_RS22240at 4252.626 kb on - strand, within LU632_RS22240at 4252.673 kb on + strandat 4252.675 kb on + strandat 4252.675 kb on + strandat 4252.675 kb on + strandat 4252.675 kb on + strandat 4252.675 kb on + strandat 4252.676 kb on - strandat 4252.676 kb on - strandat 4252.676 kb on - strandat 4252.676 kb on - strandat 4252.676 kb on - strandat 4252.705 kb on + strandat 4252.705 kb on + strandat 4252.724 kb on - strandat 4252.780 kb on + strand, within LU632_RS22245at 4252.780 kb on + strand, within LU632_RS22245at 4252.780 kb on + strand, within LU632_RS22245at 4252.781 kb on - strand, within LU632_RS22245at 4252.949 kb on + strand, within LU632_RS22245at 4252.949 kb on + strand, within LU632_RS22245at 4252.949 kb on + strand, within LU632_RS22245at 4252.949 kb on + strand, within LU632_RS22245at 4252.950 kb on - strand, within LU632_RS22245at 4252.950 kb on - strand, within LU632_RS22245at 4252.950 kb on - strand, within LU632_RS22245at 4252.979 kb on + strandat 4252.979 kb on + strandat 4252.980 kb on - strandat 4252.980 kb on - strandat 4252.980 kb on - strandat 4253.089 kb on + strandat 4253.163 kb on + strandat 4253.223 kb on - strandat 4253.270 kb on - strandat 4253.431 kb on - strandat 4253.433 kb on + strandat 4253.562 kb on + strand, within LU632_RS22250at 4253.729 kb on + strandat 4253.730 kb on - strandat 4253.730 kb on - strandat 4253.733 kb on + strandat 4253.823 kb on + strandat 4253.824 kb on - strandat 4253.826 kb on - strandat 4253.850 kb on + strandat 4253.864 kb on + strand, within LU632_RS22255at 4253.864 kb on + strand, within LU632_RS22255at 4253.868 kb on + strand, within LU632_RS22255at 4253.869 kb on - strand, within LU632_RS22255at 4253.869 kb on - strand, within LU632_RS22255

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
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4,251,835 + LU632_RS22235 0.24 +1.2
4,251,836 - LU632_RS22235 0.24 +1.7
4,251,871 - LU632_RS22235 0.29 -2.8
4,251,916 + LU632_RS22235 0.35 +0.3
4,251,916 + LU632_RS22235 0.35 +0.9
4,251,917 - LU632_RS22235 0.35 -0.1
4,251,917 - LU632_RS22235 0.35 +0.6
4,251,917 - LU632_RS22235 0.35 -0.9
4,251,917 - LU632_RS22235 0.35 +1.5
4,251,918 + LU632_RS22235 0.36 +0.2
4,251,918 + LU632_RS22235 0.36 -2.4
4,251,919 - LU632_RS22235 0.36 +2.0
4,251,919 - LU632_RS22235 0.36 -1.4
4,251,919 - LU632_RS22235 0.36 +1.2
4,251,919 - LU632_RS22235 0.36 +1.3
4,251,919 - LU632_RS22235 0.36 -2.6
4,251,919 - LU632_RS22235 0.36 +2.5
4,251,919 - LU632_RS22235 0.36 -2.4
4,251,919 - LU632_RS22235 0.36 +0.6
4,251,919 - LU632_RS22235 0.36 -2.5
4,252,073 - LU632_RS22235 0.58 +1.3
4,252,081 - LU632_RS22235 0.59 +2.1
4,252,133 - LU632_RS22235 0.66 -0.0
4,252,269 + LU632_RS22235 0.86 -0.4
4,252,282 + LU632_RS22235 0.88 -0.9
4,252,283 - LU632_RS22235 0.88 +1.5
4,252,356 + +2.0
4,252,356 + -2.5
4,252,356 + -0.0
4,252,357 - +1.6
4,252,357 - -2.0
4,252,431 + LU632_RS22240 0.21 +0.6
4,252,431 + LU632_RS22240 0.21 -0.6
4,252,539 + LU632_RS22240 0.52 +3.0
4,252,586 + LU632_RS22240 0.65 -0.2
4,252,586 + LU632_RS22240 0.65 -0.4
4,252,587 - LU632_RS22240 0.66 +2.0
4,252,591 + LU632_RS22240 0.67 -2.0
4,252,604 + LU632_RS22240 0.70 -0.1
4,252,605 - LU632_RS22240 0.71 +2.0
4,252,608 - LU632_RS22240 0.72 -3.0
4,252,608 - LU632_RS22240 0.72 +1.2
4,252,611 - LU632_RS22240 0.72 +1.9
4,252,625 + LU632_RS22240 0.76 +0.3
4,252,625 + LU632_RS22240 0.76 +1.9
4,252,626 - LU632_RS22240 0.77 -2.2
4,252,626 - LU632_RS22240 0.77 +4.9
4,252,673 + +0.4
4,252,675 + -0.6
4,252,675 + -1.0
4,252,675 + +1.8
4,252,675 + -1.5
4,252,675 + -3.4
4,252,676 - -0.4
4,252,676 - -0.3
4,252,676 - -0.4
4,252,676 - +1.4
4,252,676 - -0.6
4,252,705 + -0.4
4,252,705 + -1.7
4,252,724 - +0.9
4,252,780 + LU632_RS22245 0.10 +2.5
4,252,780 + LU632_RS22245 0.10 -2.7
4,252,780 + LU632_RS22245 0.10 +4.9
4,252,781 - LU632_RS22245 0.11 +2.0
4,252,949 + LU632_RS22245 0.85 +1.8
4,252,949 + LU632_RS22245 0.85 +3.1
4,252,949 + LU632_RS22245 0.85 +0.5
4,252,949 + LU632_RS22245 0.85 +3.0
4,252,950 - LU632_RS22245 0.86 +1.5
4,252,950 - LU632_RS22245 0.86 +2.0
4,252,950 - LU632_RS22245 0.86 -1.7
4,252,979 + -1.0
4,252,979 + -2.2
4,252,980 - +0.2
4,252,980 - +3.3
4,252,980 - -1.1
4,253,089 + -0.0
4,253,163 + +0.5
4,253,223 - -1.2
4,253,270 - -0.3
4,253,431 - +0.6
4,253,433 + -0.3
4,253,562 + LU632_RS22250 0.39 +0.9
4,253,729 + -1.0
4,253,730 - +3.2
4,253,730 - +1.9
4,253,733 + -2.4
4,253,823 + -2.5
4,253,824 - +1.4
4,253,826 - -0.7
4,253,850 + +0.7
4,253,864 + LU632_RS22255 0.14 +0.1
4,253,864 + LU632_RS22255 0.14 -1.9
4,253,868 + LU632_RS22255 0.15 -2.5
4,253,869 - LU632_RS22255 0.16 +1.1
4,253,869 - LU632_RS22255 0.16 +0.6

Or see this region's nucleotide sequence