Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21965

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntwaaA and LU632_RS21965 are separated by 0 nucleotidesLU632_RS21965 and coaD overlap by 4 nucleotidescoaD and mutM are separated by 19 nucleotides LU632_RS21960: waaA - lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase, at 4,196,224 to 4,197,498 waaA LU632_RS21965: LU632_RS21965 - glycosyltransferase family 2 protein, at 4,197,499 to 4,198,284 _RS21965 LU632_RS21970: coaD - pantetheine-phosphate adenylyltransferase, at 4,198,281 to 4,198,757 coaD LU632_RS21975: mutM - bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase, at 4,198,777 to 4,199,586 mutM Position (kb) 4197 4198 4199Strain fitness (log2 ratio) -2 -1 0 1 2at 4198.885 kb on + strand, within mutMat 4198.981 kb on - strand, within mutMat 4198.986 kb on + strand, within mutMat 4198.986 kb on + strand, within mutMat 4199.076 kb on - strand, within mutMat 4199.080 kb on - strand, within mutMat 4199.125 kb on + strand, within mutMat 4199.162 kb on + strand, within mutMat 4199.163 kb on - strand, within mutMat 4199.179 kb on - strand, within mutMat 4199.273 kb on + strand, within mutM

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Per-strain Table

Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
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4,198,885 + mutM LU632_RS21975 0.13 -1.8
4,198,981 - mutM LU632_RS21975 0.25 +0.4
4,198,986 + mutM LU632_RS21975 0.26 -2.2
4,198,986 + mutM LU632_RS21975 0.26 +1.9
4,199,076 - mutM LU632_RS21975 0.37 +1.0
4,199,080 - mutM LU632_RS21975 0.37 -0.7
4,199,125 + mutM LU632_RS21975 0.43 +1.1
4,199,162 + mutM LU632_RS21975 0.48 -1.9
4,199,163 - mutM LU632_RS21975 0.48 +0.4
4,199,179 - mutM LU632_RS21975 0.50 +1.4
4,199,273 + mutM LU632_RS21975 0.61 -1.4

Or see this region's nucleotide sequence