Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21415

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
4,091,608	+	aaeA	LU632_RS21405	0.62	-0.5
4,091,610	+	aaeA	LU632_RS21405	0.62	+0.1
4,091,678	+	aaeA	LU632_RS21405	0.69	-1.1
4,091,678	+	aaeA	LU632_RS21405	0.69	+0.8
4,091,871	-				-0.6
4,091,950	-				-1.7
4,092,055	-		LU632_RS21410	0.41	+2.0
4,092,150	-		LU632_RS21410	0.87	+0.5
4,092,250	+				-3.0
4,092,251	-				+1.0
4,092,308	+				-1.8
4,092,308	+				+0.9
4,092,317	-				-0.2
4,092,319	+				-0.4
4,092,319	+				+0.5
4,092,319	+				-1.8
4,092,319	+				-2.2
4,092,320	-				+1.2
4,092,320	-				+0.9
4,092,352	+				+0.4
4,092,352	+				+1.2
4,092,398	+				-0.4
4,092,402	+				+2.2
4,092,413	-				-2.2
4,092,492	+				+0.8
4,092,495	+				+0.4
4,092,496	-				-1.6
4,092,496	-				+0.4
4,092,515	+				+0.7
4,092,522	-				+0.3
4,092,581	+	aaeR	LU632_RS21415	0.15	+2.7
4,092,585	+	aaeR	LU632_RS21415	0.16	+0.3
4,092,591	+	aaeR	LU632_RS21415	0.17	+0.6
4,092,595	-	aaeR	LU632_RS21415	0.17	+2.2
4,092,595	-	aaeR	LU632_RS21415	0.17	+0.9
4,092,595	-	aaeR	LU632_RS21415	0.17	-1.0
4,092,699	+	aaeR	LU632_RS21415	0.28	-2.3
4,092,702	+	aaeR	LU632_RS21415	0.29	-2.6
4,092,860	+	aaeR	LU632_RS21415	0.46	+1.0
4,092,860	+	aaeR	LU632_RS21415	0.46	+3.4
4,092,861	-	aaeR	LU632_RS21415	0.46	+0.6
4,092,861	-	aaeR	LU632_RS21415	0.46	-1.8
4,092,890	-	aaeR	LU632_RS21415	0.49	+0.4
4,092,899	-	aaeR	LU632_RS21415	0.50	-2.6
4,092,950	-	aaeR	LU632_RS21415	0.56	-2.9
4,093,098	+	aaeR	LU632_RS21415	0.72	+3.4
4,093,198	-	aaeR	LU632_RS21415	0.83	+0.5
4,093,242	-	aaeR	LU632_RS21415	0.87	-3.1
4,093,251	-	aaeR	LU632_RS21415	0.88	+0.9
4,093,251	-	aaeR	LU632_RS21415	0.88	-0.8
4,093,281	+				+0.3
4,093,282	-				+0.4
4,093,294	+				-1.1
4,093,294	+				+0.1
4,093,295	-				+3.0
4,093,295	-				-3.0
4,093,298	+				-0.0
4,093,298	+				-1.4
4,093,298	+				-0.4
4,093,310	+				+1.6
4,093,315	-				-0.6
4,093,335	-				+0.8
4,093,533	+				-0.9
4,093,603	-	tldD	LU632_RS21420	0.15	+0.6
4,093,604	+	tldD	LU632_RS21420	0.15	-1.6
4,093,604	+	tldD	LU632_RS21420	0.15	-0.6
4,093,604	+	tldD	LU632_RS21420	0.15	+0.6
4,093,605	-	tldD	LU632_RS21420	0.15	-3.1
4,093,691	-	tldD	LU632_RS21420	0.21	-0.7
4,093,734	+	tldD	LU632_RS21420	0.24	+2.2
4,093,734	+	tldD	LU632_RS21420	0.24	-0.8
4,093,734	+	tldD	LU632_RS21420	0.24	-0.9
4,093,735	-	tldD	LU632_RS21420	0.24	-0.7
4,093,735	-	tldD	LU632_RS21420	0.24	-1.7
4,093,736	+	tldD	LU632_RS21420	0.24	-0.6
4,093,736	+	tldD	LU632_RS21420	0.24	+0.6
4,093,736	+	tldD	LU632_RS21420	0.24	-2.9
4,093,736	+	tldD	LU632_RS21420	0.24	-0.7
4,093,736	+	tldD	LU632_RS21420	0.24	-1.3
4,093,736	+	tldD	LU632_RS21420	0.24	-2.0
4,093,736	+	tldD	LU632_RS21420	0.24	-0.4
4,093,737	-	tldD	LU632_RS21420	0.24	-0.8
4,093,737	-	tldD	LU632_RS21420	0.24	+0.3
4,093,737	-	tldD	LU632_RS21420	0.24	-2.5
4,093,772	+	tldD	LU632_RS21420	0.26	-1.4
4,093,772	+	tldD	LU632_RS21420	0.26	-0.2
4,093,871	-	tldD	LU632_RS21420	0.33	-1.7
4,093,878	-	tldD	LU632_RS21420	0.34	-0.5
4,094,140	-	tldD	LU632_RS21420	0.52	+0.8
4,094,349	-	tldD	LU632_RS21420	0.66	-0.3