Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS21370

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
4,085,090	+	mdh	LU632_RS21365	0.38	+0.6
4,085,201	-	mdh	LU632_RS21365	0.50	-2.4
4,085,274	-	mdh	LU632_RS21365	0.58	-3.3
4,085,300	-	mdh	LU632_RS21365	0.61	-2.2
4,085,344	+	mdh	LU632_RS21365	0.66	-5.2
4,085,344	+	mdh	LU632_RS21365	0.66	-3.0
4,085,344	+	mdh	LU632_RS21365	0.66	-5.9
4,085,368	+	mdh	LU632_RS21365	0.68	+0.6
4,085,387	-	mdh	LU632_RS21365	0.70	-1.4
4,085,397	-	mdh	LU632_RS21365	0.71	-3.2
4,085,476	+	mdh	LU632_RS21365	0.80	-4.8
4,085,501	-	mdh	LU632_RS21365	0.82	-0.4
4,085,563	+	mdh	LU632_RS21365	0.89	+2.2
4,085,669	-				-2.6
4,085,681	-				+2.6
4,085,681	-				+0.1
4,085,682	+				-3.5
4,085,683	-				+0.6
4,085,683	-				-1.7
4,085,685	+				-3.3
4,085,685	+				-4.6
4,085,788	+				-2.6
4,085,789	-				+0.5
4,085,789	-				+1.3
4,085,814	-				-1.2
4,085,816	+				-0.6
4,085,855	-				+3.1
4,085,915	-				-0.6
4,086,032	-				-2.0
4,086,279	+	argR	LU632_RS21370	0.42	-1.0
4,086,488	-	argR	LU632_RS21370	0.86	+0.6
4,086,548	-				-1.8
4,086,581	+				-0.0
4,086,582	-				+0.8
4,086,623	+				+1.0
4,086,623	-				+0.7
4,086,662	+				+0.2
4,086,663	-				-0.1
4,086,663	-				-0.3
4,086,708	+				-1.4
4,086,755	-				-2.2
4,086,763	+				-2.0
4,086,764	-				+3.0
4,086,947	+				+0.5
4,086,952	+				-0.4
4,086,953	-				+3.3
4,086,954	+				-0.4
4,086,954	+				-1.0
4,086,984	+		LU632_RS21375	0.14	+0.0
4,087,020	-		LU632_RS21375	0.32	+2.1
4,087,106	-		LU632_RS21375	0.77	+4.6
4,087,106	-		LU632_RS21375	0.77	+0.4
4,087,106	-		LU632_RS21375	0.77	-0.1
4,087,107	+		LU632_RS21375	0.78	+1.0
4,087,108	-		LU632_RS21375	0.78	+0.0
4,087,120	+		LU632_RS21375	0.84	-0.1
4,087,121	-		LU632_RS21375	0.85	-0.7
4,087,353	-		LU632_RS21380	0.46	+0.6
4,087,354	+		LU632_RS21380	0.46	+0.2
4,087,354	+		LU632_RS21380	0.46	-0.1
4,087,355	-		LU632_RS21380	0.47	+0.1
4,087,355	-		LU632_RS21380	0.47	+0.9
4,087,355	-		LU632_RS21380	0.47	+1.3
4,087,374	-		LU632_RS21380	0.54	-0.8
4,087,374	-		LU632_RS21380	0.54	+0.2
4,087,436	-		LU632_RS21380	0.77	+0.0
4,087,499	-				+0.2
4,087,532	+				+1.1
4,087,533	-		LU632_RS21385	0.10	-0.9
4,087,551	-		LU632_RS21385	0.21	+0.0
4,087,551	-		LU632_RS21385	0.21	-0.3