Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LU632_RS21100 and ftsH are separated by 108 nucleotides ftsH and rlmE are separated by 55 nucleotides rlmE and yhbY are separated by 126 nucleotides
LU632_RS21100: LU632_RS21100 - IS110 family transposase, at 4,033,463 to 4,034,458
_RS21100
LU632_RS21105: ftsH - ATP-dependent zinc metalloprotease FtsH, at 4,034,567 to 4,036,498
ftsH
LU632_RS21110: rlmE - 23S rRNA (uridine(2552)-2'-O)-methyltransferase RlmE, at 4,036,554 to 4,037,183
rlmE
LU632_RS21115: yhbY - ribosome assembly RNA-binding protein YhbY, at 4,037,310 to 4,037,603
yhbY
Position (kb) 4034
4035
4036
4037 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 4034.523 kb on + strand at 4034.523 kb on + strand at 4034.568 kb on + strand at 4034.651 kb on - strand at 4036.723 kb on - strand, within rlmE at 4036.760 kb on - strand, within rlmE at 4036.803 kb on - strand, within rlmE at 4036.803 kb on - strand, within rlmE at 4036.803 kb on - strand, within rlmE at 4036.803 kb on - strand, within rlmE at 4036.822 kb on - strand, within rlmE at 4036.822 kb on - strand, within rlmE at 4036.822 kb on - strand, within rlmE at 4036.831 kb on - strand, within rlmE at 4036.853 kb on - strand, within rlmE at 4036.935 kb on - strand, within rlmE at 4036.961 kb on + strand, within rlmE at 4036.974 kb on - strand, within rlmE at 4036.978 kb on - strand, within rlmE at 4036.981 kb on + strand, within rlmE at 4036.981 kb on + strand, within rlmE at 4036.981 kb on + strand, within rlmE at 4036.982 kb on - strand, within rlmE at 4037.036 kb on + strand, within rlmE at 4037.119 kb on + strand, within rlmE at 4037.119 kb on + strand, within rlmE at 4037.119 kb on + strand, within rlmE at 4037.120 kb on - strand, within rlmE at 4037.183 kb on + strand at 4037.184 kb on - strand at 4037.196 kb on + strand at 4037.196 kb on + strand at 4037.197 kb on - strand at 4037.208 kb on + strand at 4037.208 kb on - strand at 4037.296 kb on + strand at 4037.296 kb on + strand at 4037.451 kb on - strand, within yhbY at 4037.457 kb on - strand, within yhbY
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 4,034,523 + +4.6 4,034,523 + +0.4 4,034,568 + +1.2 4,034,651 - +0.3 4,036,723 - rlmE LU632_RS21110 0.27 -1.4 4,036,760 - rlmE LU632_RS21110 0.33 -1.1 4,036,803 - rlmE LU632_RS21110 0.40 -1.2 4,036,803 - rlmE LU632_RS21110 0.40 -0.0 4,036,803 - rlmE LU632_RS21110 0.40 -0.1 4,036,803 - rlmE LU632_RS21110 0.40 +0.6 4,036,822 - rlmE LU632_RS21110 0.43 +0.6 4,036,822 - rlmE LU632_RS21110 0.43 -2.2 4,036,822 - rlmE LU632_RS21110 0.43 +1.2 4,036,831 - rlmE LU632_RS21110 0.44 -0.6 4,036,853 - rlmE LU632_RS21110 0.47 +0.1 4,036,935 - rlmE LU632_RS21110 0.60 -2.4 4,036,961 + rlmE LU632_RS21110 0.65 +0.6 4,036,974 - rlmE LU632_RS21110 0.67 -1.0 4,036,978 - rlmE LU632_RS21110 0.67 +0.0 4,036,981 + rlmE LU632_RS21110 0.68 -0.4 4,036,981 + rlmE LU632_RS21110 0.68 -2.4 4,036,981 + rlmE LU632_RS21110 0.68 -0.2 4,036,982 - rlmE LU632_RS21110 0.68 +0.2 4,037,036 + rlmE LU632_RS21110 0.77 +0.6 4,037,119 + rlmE LU632_RS21110 0.90 +1.2 4,037,119 + rlmE LU632_RS21110 0.90 -2.0 4,037,119 + rlmE LU632_RS21110 0.90 -2.2 4,037,120 - rlmE LU632_RS21110 0.90 -2.9 4,037,183 + -1.0 4,037,184 - +0.6 4,037,196 + +1.3 4,037,196 + -1.4 4,037,197 - +3.2 4,037,208 + -1.3 4,037,208 - -0.1 4,037,296 + +0.4 4,037,296 + -0.9 4,037,451 - yhbY LU632_RS21115 0.48 +1.5 4,037,457 - yhbY LU632_RS21115 0.50 -2.5
Or see this region's nucleotide sequence