Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20765

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
3,962,588	-		LU632_RS20755	0.58	-2.4
3,963,040	+				-1.6
3,963,394	+		LU632_RS20760	0.87	+0.1
3,963,435	+				-1.5
3,963,440	+				+0.8
3,963,440	+				+2.4
3,963,441	-				+0.1
3,963,562	+				-0.1
3,963,562	+				-0.2
3,963,562	+				+1.6
3,963,563	-				-1.9
3,963,705	+		LU632_RS20765	0.22	-0.4
3,963,705	+		LU632_RS20765	0.22	-0.0
3,963,706	-		LU632_RS20765	0.22	-0.4
3,963,758	+		LU632_RS20765	0.26	+0.8
3,963,758	+		LU632_RS20765	0.26	+0.9
3,963,759	-		LU632_RS20765	0.26	-0.2
3,963,759	-		LU632_RS20765	0.26	+0.7
3,963,765	+		LU632_RS20765	0.27	-3.1
3,963,766	-		LU632_RS20765	0.27	-0.5
3,963,789	+		LU632_RS20765	0.29	+1.3
3,963,789	+		LU632_RS20765	0.29	-0.4
3,963,790	-		LU632_RS20765	0.29	-1.0
3,963,837	+		LU632_RS20765	0.33	-1.2
3,963,838	-		LU632_RS20765	0.33	+0.1
3,963,838	-		LU632_RS20765	0.33	-2.2
3,963,838	-		LU632_RS20765	0.33	+0.0
3,963,842	-		LU632_RS20765	0.33	+1.0
3,963,842	-		LU632_RS20765	0.33	-2.4
3,964,024	+		LU632_RS20765	0.49	+1.3
3,964,025	-		LU632_RS20765	0.49	-0.5
3,964,025	-		LU632_RS20765	0.49	+1.5
3,964,025	-		LU632_RS20765	0.49	-0.8
3,964,025	-		LU632_RS20765	0.49	-0.4
3,964,048	+		LU632_RS20765	0.51	+0.3
3,964,048	+		LU632_RS20765	0.51	-0.4
3,964,049	-		LU632_RS20765	0.51	+0.6
3,964,070	-		LU632_RS20765	0.53	+0.6
3,964,161	+		LU632_RS20765	0.60	-0.4
3,964,162	-		LU632_RS20765	0.60	-0.3
3,964,226	+		LU632_RS20765	0.66	+0.4
3,964,226	+		LU632_RS20765	0.66	+0.1
3,964,226	+		LU632_RS20765	0.66	-1.0
3,964,227	-		LU632_RS20765	0.66	-1.7
3,964,227	-		LU632_RS20765	0.66	+2.6
3,964,227	-		LU632_RS20765	0.66	-0.6
3,964,243	-		LU632_RS20765	0.67	+1.7
3,964,291	+		LU632_RS20765	0.71	-2.2
3,964,291	+		LU632_RS20765	0.71	+0.6
3,964,293	+		LU632_RS20765	0.72	-1.0
3,964,293	+		LU632_RS20765	0.72	+0.8
3,964,294	-		LU632_RS20765	0.72	-1.5
3,964,375	-		LU632_RS20765	0.78	-0.4
3,964,461	+		LU632_RS20765	0.86	+2.1
3,964,461	+		LU632_RS20765	0.86	-1.5
3,964,506	+		LU632_RS20765	0.90	-0.8
3,964,540	+				+0.1
3,964,540	+				-2.5
3,964,587	+				+0.2
3,964,677	-				-1.4
3,964,679	-				+0.5
3,964,830	-				+0.5
3,964,942	+				+0.2
3,965,009	+				+1.6
3,965,010	-				-3.9
3,965,466	-				-1.5