Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20610

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
3,924,475	+		LU632_RS20600	0.85	-2.4
3,924,475	+		LU632_RS20600	0.85	+0.1
3,924,475	+		LU632_RS20600	0.85	-0.1
3,924,475	+		LU632_RS20600	0.85	+0.8
3,924,475	+		LU632_RS20600	0.85	-1.7
3,924,476	-		LU632_RS20600	0.85	-0.4
3,924,476	-		LU632_RS20600	0.85	+0.1
3,924,476	-		LU632_RS20600	0.85	+1.3
3,924,476	-		LU632_RS20600	0.85	+1.8
3,924,476	-		LU632_RS20600	0.85	-2.6
3,924,477	+		LU632_RS20600	0.85	+0.6
3,924,497	+		LU632_RS20600	0.89	-0.9
3,924,498	-		LU632_RS20600	0.90	+1.8
3,924,671	+				+2.2
3,924,822	+		LU632_RS20605	0.32	-0.7
3,924,822	+		LU632_RS20605	0.32	-0.1
3,924,822	+		LU632_RS20605	0.32	-0.1
3,924,822	+		LU632_RS20605	0.32	+0.4
3,924,822	+		LU632_RS20605	0.32	-1.8
3,924,822	+		LU632_RS20605	0.32	+0.2
3,924,822	+		LU632_RS20605	0.32	-0.1
3,924,822	+		LU632_RS20605	0.32	-0.6
3,924,823	-		LU632_RS20605	0.32	-0.4
3,924,823	-		LU632_RS20605	0.32	+0.5
3,924,823	-		LU632_RS20605	0.32	-1.6
3,924,842	+		LU632_RS20605	0.36	-0.4
3,924,913	+		LU632_RS20605	0.49	+2.1
3,924,914	-		LU632_RS20605	0.49	-1.3
3,924,914	-		LU632_RS20605	0.49	+0.8
3,924,921	-		LU632_RS20605	0.50	-1.2
3,924,960	+		LU632_RS20605	0.58	-0.8
3,925,071	+		LU632_RS20605	0.78	-1.0
3,925,276	-				-0.0
3,925,302	-				+0.2
3,925,307	-				+0.8
3,925,312	+				-0.8
3,925,313	-				-0.1
3,925,390	-				-0.2
3,925,390	-				-0.4
3,925,390	-				+0.2
3,925,395	+				+0.2
3,925,396	-				-0.2
3,925,404	-				-1.0
3,927,462	-	yqiA	LU632_RS20615	0.11	-1.8
3,927,462	-	yqiA	LU632_RS20615	0.11	-0.1
3,927,462	-	yqiA	LU632_RS20615	0.11	+1.0
3,927,462	-	yqiA	LU632_RS20615	0.11	-2.0
3,927,510	-	yqiA	LU632_RS20615	0.19	+0.1
3,927,510	-	yqiA	LU632_RS20615	0.19	-0.5
3,927,557	-	yqiA	LU632_RS20615	0.27	-1.0
3,927,615	-	yqiA	LU632_RS20615	0.37	+1.1
3,927,638	+	yqiA	LU632_RS20615	0.41	+4.5
3,927,638	+	yqiA	LU632_RS20615	0.41	+1.3
3,927,639	-	yqiA	LU632_RS20615	0.41	+1.9
3,927,639	-	yqiA	LU632_RS20615	0.41	+0.2
3,927,639	-	yqiA	LU632_RS20615	0.41	+1.6
3,927,639	-	yqiA	LU632_RS20615	0.41	-0.8
3,927,688	+	yqiA	LU632_RS20615	0.49	+0.6
3,927,736	-	yqiA	LU632_RS20615	0.58	+1.6
3,927,761	+	yqiA	LU632_RS20615	0.62	+1.2
3,927,761	+	yqiA	LU632_RS20615	0.62	+0.6
3,927,761	+	yqiA	LU632_RS20615	0.62	-2.0
3,927,762	-	yqiA	LU632_RS20615	0.62	+0.6
3,927,875	+	yqiA	LU632_RS20615	0.82	+0.9
3,927,875	+	yqiA	LU632_RS20615	0.82	+2.0
3,927,875	+	yqiA	LU632_RS20615	0.82	+1.6
3,927,875	+	yqiA	LU632_RS20615	0.82	+1.5
3,927,876	-	yqiA	LU632_RS20615	0.82	-1.3
3,927,876	-	yqiA	LU632_RS20615	0.82	+1.0
3,927,876	-	yqiA	LU632_RS20615	0.82	-1.8
3,927,876	-	yqiA	LU632_RS20615	0.82	+0.1
3,927,876	-	yqiA	LU632_RS20615	0.82	-0.0
3,927,876	-	yqiA	LU632_RS20615	0.82	+1.6
3,927,949	-				+1.0
3,927,966	-				+3.2
3,927,986	+				+3.8
3,928,203	+	cpdA	LU632_RS20620	0.26	+7.4
3,928,243	+	cpdA	LU632_RS20620	0.31	+6.6
3,928,246	+	cpdA	LU632_RS20620	0.32	+7.2
3,928,246	+	cpdA	LU632_RS20620	0.32	+6.4
3,928,247	-	cpdA	LU632_RS20620	0.32	+7.2
3,928,296	+	cpdA	LU632_RS20620	0.38	+7.2
3,928,324	+	cpdA	LU632_RS20620	0.41	+8.1