Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS20585

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
3,921,040	-				+1.8
3,921,040	-				+1.1
3,921,070	-				-0.3
3,921,070	-				+0.8
3,921,070	-				-1.4
3,921,070	-				+0.4
3,921,223	-		LU632_RS20585	0.11	+0.2
3,921,223	-		LU632_RS20585	0.11	+0.6
3,921,273	+		LU632_RS20585	0.17	-1.0
3,921,274	-		LU632_RS20585	0.17	+0.1
3,921,295	+		LU632_RS20585	0.20	+0.5
3,921,296	-		LU632_RS20585	0.20	-1.4
3,921,296	-		LU632_RS20585	0.20	+0.0
3,921,373	+		LU632_RS20585	0.30	-2.6
3,921,488	+		LU632_RS20585	0.45	-0.1
3,921,488	+		LU632_RS20585	0.45	+0.6
3,921,488	+		LU632_RS20585	0.45	-0.8
3,921,698	-		LU632_RS20585	0.72	-2.4
3,921,756	+		LU632_RS20585	0.80	+0.0
3,921,805	+		LU632_RS20585	0.86	-0.0
3,921,806	-		LU632_RS20585	0.86	+0.6
3,921,809	+		LU632_RS20585	0.87	+2.5
3,921,810	-		LU632_RS20585	0.87	+0.2
3,921,810	-		LU632_RS20585	0.87	-0.4
3,921,810	-		LU632_RS20585	0.87	-0.0
3,921,884	+				-0.6
3,921,906	-				-1.3
3,921,906	-				+0.6
3,921,906	-				-1.3
3,921,963	-				+0.4
3,922,021	+				-0.3
3,922,021	+				-0.2
3,922,021	+				+0.4
3,922,021	+				+0.7
3,922,022	-				-0.1
3,922,022	-				-0.4
3,922,023	+				-1.0
3,922,023	+				-0.2
3,922,023	+				-2.0
3,922,024	-				+0.0
3,922,024	-				-0.4
3,922,024	-				+0.8
3,922,024	-				+3.3
3,922,024	-				-0.2
3,922,024	-				-0.3
3,922,024	-				-0.8
3,922,102	+				-1.4
3,922,102	+				+0.1
3,922,102	+				+0.6
3,922,103	-				+1.2
3,922,103	-				+0.3
3,922,103	-				-0.8
3,922,106	+				+0.7
3,922,107	-				+0.4
3,922,142	+				-2.4
3,922,143	-				-1.8
3,922,145	-				+0.8
3,922,285	-				+1.5
3,922,293	+				+1.5
3,922,296	+				+0.6
3,922,323	+				+0.5
3,922,476	+				+0.3
3,922,489	+				-1.3
3,922,490	-				+1.1
3,922,591	-				-1.4
3,922,660	+				+0.4
3,922,661	-				-1.8
3,922,661	-				+0.4
3,922,671	-				+0.6
3,922,718	-				+0.6
3,922,727	-				-0.9
3,922,761	+				+0.0
3,922,762	-				-1.0
3,922,762	-				-1.5
3,922,762	-				+0.9
3,922,786	-				+0.6
3,922,786	-				-1.1