Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19765

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
3,754,012	+				-0.1
3,754,013	-				+0.2
3,754,013	-				+0.1
3,754,013	-				+1.2
3,754,031	-				-0.4
3,754,031	-				+0.3
3,754,052	+				+1.1
3,754,059	-				+0.4
3,754,093	-				+0.1
3,754,124	-				+0.9
3,754,130	+				+0.2
3,754,130	+				+0.3
3,754,135	-				+0.5
3,754,135	-				+1.3
3,754,160	+				+1.9
3,754,161	-				-2.7
3,754,161	-				-0.7
3,754,161	-				+2.5
3,754,161	-				-1.4
3,754,161	-				+1.3
3,754,249	+				-1.9
3,754,250	-				+0.6
3,754,255	+	lpxP	LU632_RS19765	0.10	-0.6
3,754,399	+	lpxP	LU632_RS19765	0.26	+1.1
3,754,559	+	lpxP	LU632_RS19765	0.43	-2.6
3,754,640	-	lpxP	LU632_RS19765	0.52	-0.9
3,754,787	-	lpxP	LU632_RS19765	0.68	+0.1
3,754,879	+	lpxP	LU632_RS19765	0.78	-1.0
3,754,879	+	lpxP	LU632_RS19765	0.78	+0.6
3,754,941	+	lpxP	LU632_RS19765	0.85	+1.2
3,754,974	+	lpxP	LU632_RS19765	0.88	+0.1
3,754,975	-	lpxP	LU632_RS19765	0.88	-0.4
3,754,976	+	lpxP	LU632_RS19765	0.88	+0.6
3,754,977	-	lpxP	LU632_RS19765	0.89	+1.7
3,755,022	+				+0.4
3,755,023	-				+0.9
3,755,023	-				+1.5
3,755,023	-				-0.2
3,755,023	-				-0.4
3,755,024	+				-2.0
3,755,024	+				-0.4
3,755,024	+				+0.7
3,755,024	+				-1.4
3,755,024	+				-1.4
3,755,024	+				-1.0
3,755,024	+				+0.3
3,755,024	+				-1.0
3,755,025	-				+2.2
3,755,025	-				+1.5
3,755,025	-				-2.6
3,755,025	-				+0.1
3,755,025	-				-2.0
3,755,080	-				-0.3
3,755,080	-				+1.1
3,755,144	+				+0.6
3,755,146	+				-1.5
3,755,244	-				-0.0
3,755,275	-				+2.2
3,755,362	+				-2.2
3,755,408	+				-0.6
3,755,409	-				+2.0
3,755,605	+		LU632_RS19770	0.18	+0.6
3,755,605	+		LU632_RS19770	0.18	+0.1
3,755,606	-		LU632_RS19770	0.18	-2.9
3,755,606	-		LU632_RS19770	0.18	-0.8
3,755,606	-		LU632_RS19770	0.18	+0.6
3,755,656	+		LU632_RS19770	0.23	-1.4
3,755,717	+		LU632_RS19770	0.29	-0.3
3,755,733	-		LU632_RS19770	0.30	-1.2
3,755,791	-		LU632_RS19770	0.36	+1.2
3,755,793	+		LU632_RS19770	0.36	-2.2
3,755,924	+		LU632_RS19770	0.49	-2.6
3,755,934	+		LU632_RS19770	0.50	-3.3
3,755,934	+		LU632_RS19770	0.50	+0.2
3,755,934	+		LU632_RS19770	0.50	-1.3
3,755,935	-		LU632_RS19770	0.50	-3.8
3,755,937	-		LU632_RS19770	0.50	-2.7
3,756,028	-		LU632_RS19770	0.59	-1.3
3,756,028	-		LU632_RS19770	0.59	-2.4
3,756,065	+		LU632_RS19770	0.63	-0.3
3,756,066	-		LU632_RS19770	0.63	-2.4
3,756,066	-		LU632_RS19770	0.63	-1.7
3,756,074	-		LU632_RS19770	0.64	-1.2