Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19585

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
3,712,637	+				+0.1
3,712,638	-				-0.3
3,712,638	-				-1.7
3,712,659	+				-0.0
3,712,683	+				+0.6
3,712,684	-				+0.1
3,712,686	+				+0.6
3,712,734	+				+1.7
3,712,737	+				+2.0
3,712,737	+				-2.4
3,712,738	-				-0.7
3,712,800	+	fabR	LU632_RS19580	0.18	+2.8
3,712,847	-	fabR	LU632_RS19580	0.25	+2.5
3,713,027	-	fabR	LU632_RS19580	0.54	+2.7
3,713,053	+	fabR	LU632_RS19580	0.58	-0.4
3,713,053	+	fabR	LU632_RS19580	0.58	+2.2
3,713,054	-	fabR	LU632_RS19580	0.58	+5.3
3,713,117	+	fabR	LU632_RS19580	0.68	-0.7
3,713,118	-	fabR	LU632_RS19580	0.68	+2.0
3,713,354	-				-1.0
3,713,355	+				+2.5
3,713,356	-				-1.0
3,713,372	+				+0.6
3,713,378	-				+0.2
3,713,411	-				+0.1
3,713,422	+				-0.4
3,713,423	-				-0.2
3,713,434	-				-3.4
3,713,495	+				-1.2
3,713,499	+				+0.2
3,713,499	+				-0.2
3,713,500	-				-1.8
3,713,500	-				-2.6
3,713,506	+				-1.0
3,713,507	-				-2.9
3,713,507	-				-2.5
3,713,507	-				-2.0
3,713,539	+				-2.3
3,713,539	+				-3.7
3,713,539	+				+0.6
3,713,540	-				-2.4
3,713,630	-				-2.2
3,713,738	-	sthA	LU632_RS19585	0.16	+2.2
3,713,986	+	sthA	LU632_RS19585	0.34	-1.7
3,713,987	-	sthA	LU632_RS19585	0.34	-2.9
3,714,048	+	sthA	LU632_RS19585	0.38	-1.0
3,714,048	+	sthA	LU632_RS19585	0.38	-0.0
3,714,048	+	sthA	LU632_RS19585	0.38	-1.5
3,714,049	-	sthA	LU632_RS19585	0.38	-2.2
3,714,049	-	sthA	LU632_RS19585	0.38	-2.9
3,714,214	-	sthA	LU632_RS19585	0.50	-1.0
3,714,230	+	sthA	LU632_RS19585	0.51	-0.2
3,714,230	+	sthA	LU632_RS19585	0.51	+0.0
3,714,311	+	sthA	LU632_RS19585	0.57	-1.4
3,714,392	-	sthA	LU632_RS19585	0.63	-0.9
3,714,407	+	sthA	LU632_RS19585	0.64	-3.2
3,714,408	-	sthA	LU632_RS19585	0.64	-1.1
3,714,431	+	sthA	LU632_RS19585	0.66	-1.0
3,714,431	+	sthA	LU632_RS19585	0.66	-0.4
3,714,432	-	sthA	LU632_RS19585	0.66	-2.6
3,714,432	-	sthA	LU632_RS19585	0.66	-2.6
3,714,432	-	sthA	LU632_RS19585	0.66	-1.8
3,714,432	-	sthA	LU632_RS19585	0.66	-1.9
3,714,564	-	sthA	LU632_RS19585	0.75	-2.2
3,714,564	-	sthA	LU632_RS19585	0.75	-2.0
3,714,564	-	sthA	LU632_RS19585	0.75	-1.0
3,714,565	+	sthA	LU632_RS19585	0.75	-3.3
3,714,566	-	sthA	LU632_RS19585	0.75	-0.3
3,714,636	+	sthA	LU632_RS19585	0.80	-1.3
3,714,682	+	sthA	LU632_RS19585	0.83	-1.0
3,714,699	+	sthA	LU632_RS19585	0.85	-1.6
3,714,699	+	sthA	LU632_RS19585	0.85	-3.4
3,714,836	-				-1.7
3,714,838	+				-4.2
3,714,847	+				+0.2
3,714,847	+				-2.6
3,714,847	+				-3.4
3,714,848	-				-0.9
3,714,848	-				+0.6
3,714,912	-				-1.1
3,714,922	+				-0.8
3,714,923	-				+2.0
3,715,266	+	oxyR	LU632_RS19590	0.39	-1.0
3,715,267	-	oxyR	LU632_RS19590	0.40	+2.9
3,715,441	+	oxyR	LU632_RS19590	0.59	-0.9
3,715,441	+	oxyR	LU632_RS19590	0.59	-1.3
3,715,442	-	oxyR	LU632_RS19590	0.59	+3.2
3,715,484	-	oxyR	LU632_RS19590	0.64	-0.4