Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19320

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
3,652,516	-				-2.5
3,652,518	-				-1.5
3,652,566	-				-0.7
3,652,631	+				-0.8
3,652,658	+				+0.7
3,652,709	-				+2.3
3,652,750	-		LU632_RS19310	0.21	+1.1
3,652,794	+		LU632_RS19310	0.42	+0.5
3,652,794	+		LU632_RS19310	0.42	-0.5
3,652,880	+		LU632_RS19310	0.81	-1.8
3,652,881	-		LU632_RS19310	0.81	-3.0
3,652,907	-				-3.7
3,652,928	+				-1.4
3,652,929	-				+1.9
3,652,935	+				-1.0
3,652,935	+				-0.0
3,652,936	-				-0.0
3,652,944	+				+0.4
3,652,970	-				-1.9
3,653,320	+				-2.8
3,653,320	+				-0.3
3,653,320	+				-2.5
3,653,320	+				+0.3
3,653,321	-				+0.9
3,653,321	-				+2.1
3,653,321	-				+2.1
3,653,321	-				+0.2
3,653,321	-				-2.0
3,653,321	-				+0.3
3,653,321	-				-0.4
3,653,363	-				+1.5
3,653,439	-				-1.1
3,653,468	-				+0.8
3,653,480	+				+0.1
3,653,558	-		LU632_RS19320	0.11	-0.5
3,653,571	-		LU632_RS19320	0.13	+0.2
3,653,602	+		LU632_RS19320	0.17	+1.0
3,653,608	+		LU632_RS19320	0.18	+0.9
3,653,609	-		LU632_RS19320	0.18	+0.7
3,653,609	-		LU632_RS19320	0.18	-0.6
3,653,611	+		LU632_RS19320	0.19	-0.3
3,653,612	-		LU632_RS19320	0.19	-0.3
3,653,612	-		LU632_RS19320	0.19	-2.6
3,653,612	-		LU632_RS19320	0.19	-0.4
3,653,638	+		LU632_RS19320	0.23	+0.5
3,653,639	-		LU632_RS19320	0.23	+1.2
3,653,698	+		LU632_RS19320	0.32	+0.1
3,653,741	-		LU632_RS19320	0.38	-1.3
3,653,789	-		LU632_RS19320	0.45	-0.7
3,653,938	+		LU632_RS19320	0.68	-2.3
3,653,939	-		LU632_RS19320	0.68	-1.5
3,653,977	+		LU632_RS19320	0.74	-1.3
3,653,984	-		LU632_RS19320	0.75	+0.5
3,653,984	-		LU632_RS19320	0.75	+1.3
3,654,033	-		LU632_RS19320	0.82	+0.8
3,654,050	-		LU632_RS19320	0.85	+2.1
3,654,153	+				-1.0
3,654,278	+				-1.3
3,654,314	+				-1.5
3,654,319	+				-1.7
3,654,319	+				-0.3
3,654,320	-				+0.0
3,654,320	-				-0.9
3,654,320	-				-0.8
3,654,320	-				+1.5
3,654,364	-				-0.5
3,654,420	-				-0.6
3,654,420	-				-0.6
3,654,424	+				+1.6
3,654,432	+				-0.5
3,654,433	-				-0.2
3,654,433	-				+0.4
3,654,506	+		LU632_RS19325	0.17	+0.5
3,654,506	+		LU632_RS19325	0.17	-2.6
3,654,506	+		LU632_RS19325	0.17	+1.3
3,654,506	+		LU632_RS19325	0.17	-1.1
3,654,506	+		LU632_RS19325	0.17	+0.5
3,654,506	+		LU632_RS19325	0.17	+0.5
3,654,507	-		LU632_RS19325	0.17	-0.5
3,654,507	-		LU632_RS19325	0.17	-2.7
3,654,507	-		LU632_RS19325	0.17	-0.0
3,654,507	-		LU632_RS19325	0.17	-1.8
3,654,617	+		LU632_RS19325	0.37	-0.6
3,654,617	+		LU632_RS19325	0.37	+2.3
3,654,617	+		LU632_RS19325	0.37	-2.6
3,654,618	-		LU632_RS19325	0.37	+1.2
3,654,618	-		LU632_RS19325	0.37	-1.4
3,654,618	-		LU632_RS19325	0.37	+1.4
3,654,627	+		LU632_RS19325	0.39	+1.9
3,654,657	-		LU632_RS19325	0.44	+3.8
3,654,847	+		LU632_RS19325	0.79	+1.0
3,654,847	+		LU632_RS19325	0.79	-0.3
3,654,965	+				+0.0
3,654,965	+				-0.7
3,654,965	+				-1.2
3,654,965	+				-1.5
3,654,966	-				-2.5
3,655,037	+				+0.0