Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS19305

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
3,649,494	-				-0.2
3,649,723	+				-0.5
3,649,723	+				+0.5
3,649,724	-				+0.8
3,649,724	-				+2.9
3,649,724	-				-1.5
3,649,738	+				+3.0
3,649,784	+		LU632_RS19300	0.16	-0.1
3,649,785	-		LU632_RS19300	0.17	-1.8
3,649,906	-		LU632_RS19300	0.36	+0.5
3,649,949	-		LU632_RS19300	0.43	-0.1
3,649,949	-		LU632_RS19300	0.43	+0.4
3,649,950	+		LU632_RS19300	0.43	+1.2
3,649,958	-		LU632_RS19300	0.44	+0.3
3,649,958	-		LU632_RS19300	0.44	+3.0
3,649,971	+		LU632_RS19300	0.46	+0.3
3,650,030	+		LU632_RS19300	0.56	+0.5
3,650,031	-		LU632_RS19300	0.56	-0.6
3,650,064	-		LU632_RS19300	0.61	-0.5
3,650,064	-		LU632_RS19300	0.61	+0.5
3,650,064	-		LU632_RS19300	0.61	-2.3
3,650,099	+		LU632_RS19300	0.67	+1.5
3,650,206	+		LU632_RS19300	0.84	+2.4
3,650,264	-				+0.1
3,650,281	-				+0.3
3,650,289	-				-0.5
3,650,299	+				+3.6
3,650,300	-				+1.0
3,650,369	-				+1.3
3,650,419	+				+0.2
3,650,542	+				-0.2
3,651,090	+		LU632_RS19305	0.30	+0.5
3,651,091	-		LU632_RS19305	0.30	+0.6
3,651,144	+		LU632_RS19305	0.33	+0.2
3,651,207	+		LU632_RS19305	0.35	+0.0
3,651,208	-		LU632_RS19305	0.35	+0.8
3,651,237	+		LU632_RS19305	0.37	-0.8
3,651,237	+		LU632_RS19305	0.37	+1.0
3,651,498	+		LU632_RS19305	0.48	+1.5
3,651,499	-		LU632_RS19305	0.48	+2.2
3,651,520	+		LU632_RS19305	0.49	-0.2
3,651,573	-		LU632_RS19305	0.51	-0.8
3,651,604	+		LU632_RS19305	0.53	-1.2
3,651,604	+		LU632_RS19305	0.53	+1.2
3,651,604	+		LU632_RS19305	0.53	+0.2
3,651,604	+		LU632_RS19305	0.53	+1.5
3,651,605	-		LU632_RS19305	0.53	-0.5
3,651,605	-		LU632_RS19305	0.53	-1.2
3,651,712	-		LU632_RS19305	0.57	-0.3
3,651,741	+		LU632_RS19305	0.59	+1.6
3,651,742	-		LU632_RS19305	0.59	+0.5
3,651,745	-		LU632_RS19305	0.59	+1.7
3,651,862	-		LU632_RS19305	0.64	-1.0
3,651,939	-		LU632_RS19305	0.67	+0.8
3,651,989	+		LU632_RS19305	0.69	-0.0
3,652,174	-		LU632_RS19305	0.77	+4.7
3,652,202	+		LU632_RS19305	0.79	-0.9
3,652,202	+		LU632_RS19305	0.79	-2.0
3,652,400	+		LU632_RS19305	0.87	+0.5
3,652,401	-		LU632_RS19305	0.87	+2.3
3,652,516	-				-2.5
3,652,518	-				-1.5
3,652,566	-				-0.7
3,652,631	+				-0.8
3,652,658	+				+0.7
3,652,709	-				+2.3
3,652,750	-		LU632_RS19310	0.21	+1.1
3,652,794	+		LU632_RS19310	0.42	+0.5
3,652,794	+		LU632_RS19310	0.42	-0.5
3,652,880	+		LU632_RS19310	0.81	-1.8
3,652,881	-		LU632_RS19310	0.81	-3.0
3,652,907	-				-3.7
3,652,928	+				-1.4
3,652,929	-				+1.9
3,652,935	+				-1.0
3,652,935	+				-0.0
3,652,936	-				-0.0
3,652,944	+				+0.4
3,652,970	-				-1.9
3,653,320	+				-2.8
3,653,320	+				-0.3
3,653,320	+				-2.5
3,653,320	+				+0.3
3,653,321	-				+0.9
3,653,321	-				+2.1
3,653,321	-				+2.1
3,653,321	-				+0.2
3,653,321	-				-2.0
3,653,321	-				+0.3
3,653,321	-				-0.4
3,653,363	-				+1.5
3,653,439	-				-1.1
3,653,468	-				+0.8
3,653,480	+				+0.1
3,653,558	-		LU632_RS19320	0.11	-0.5
3,653,571	-		LU632_RS19320	0.13	+0.2
3,653,602	+		LU632_RS19320	0.17	+1.0
3,653,608	+		LU632_RS19320	0.18	+0.9
3,653,609	-		LU632_RS19320	0.18	+0.7
3,653,609	-		LU632_RS19320	0.18	-0.6
3,653,611	+		LU632_RS19320	0.19	-0.3
3,653,612	-		LU632_RS19320	0.19	-0.3
3,653,612	-		LU632_RS19320	0.19	-2.6
3,653,612	-		LU632_RS19320	0.19	-0.4
3,653,638	+		LU632_RS19320	0.23	+0.5
3,653,639	-		LU632_RS19320	0.23	+1.2