Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt panE and yajL overlap by 41 nucleotides yajL and LU632_RS18465 are separated by 107 nucleotides LU632_RS18465 and LU632_RS18470 are separated by 203 nucleotides
LU632_RS18455: panE - 2-dehydropantoate 2-reductase, at 3,487,758 to 3,488,678
panE
LU632_RS18460: yajL - protein deglycase YajL, at 3,488,638 to 3,489,228
yajL
LU632_RS18465: LU632_RS18465 - IS256 family transposase, at 3,489,336 to 3,490,544
_RS18465
LU632_RS18470: LU632_RS18470 - IS4 family transposase, at 3,490,748 to 3,491,873
_RS18470
Position (kb) 3489
3490
3491 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 3488.440 kb on + strand, within panE at 3488.441 kb on - strand, within panE at 3488.445 kb on + strand, within panE at 3488.445 kb on + strand, within panE at 3488.533 kb on - strand, within panE at 3488.533 kb on - strand, within panE at 3488.534 kb on + strand, within panE at 3488.534 kb on + strand, within panE at 3488.535 kb on - strand, within panE at 3488.544 kb on + strand, within panE at 3488.612 kb on + strand at 3488.708 kb on + strand, within yajL at 3488.708 kb on + strand, within yajL at 3489.003 kb on + strand, within yajL at 3489.006 kb on + strand, within yajL at 3489.006 kb on + strand, within yajL at 3489.006 kb on + strand, within yajL at 3489.006 kb on + strand, within yajL at 3489.036 kb on + strand, within yajL at 3489.141 kb on + strand, within yajL at 3489.141 kb on + strand, within yajL at 3489.142 kb on - strand, within yajL at 3489.142 kb on - strand, within yajL at 3489.142 kb on - strand, within yajL at 3489.159 kb on + strand, within yajL at 3489.226 kb on + strand at 3489.227 kb on - strand at 3489.273 kb on - strand at 3490.672 kb on + strand at 3490.702 kb on - strand at 3490.858 kb on - strand at 3490.858 kb on - strand at 3490.858 kb on - strand at 3490.908 kb on + strand, within LU632_RS18470 at 3490.935 kb on + strand, within LU632_RS18470 at 3491.058 kb on - strand, within LU632_RS18470 at 3491.190 kb on + strand, within LU632_RS18470 at 3491.190 kb on + strand, within LU632_RS18470 at 3491.190 kb on + strand, within LU632_RS18470 at 3491.190 kb on + strand, within LU632_RS18470 at 3491.190 kb on + strand, within LU632_RS18470 at 3491.191 kb on - strand, within LU632_RS18470 at 3491.343 kb on - strand, within LU632_RS18470 at 3491.343 kb on - strand, within LU632_RS18470 at 3491.374 kb on + strand, within LU632_RS18470
Per-strain Table
Position Strand Gene LocusTag Fraction Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1) remove 3,488,440 + panE LU632_RS18455 0.74 +0.1 3,488,441 - panE LU632_RS18455 0.74 -1.5 3,488,445 + panE LU632_RS18455 0.75 -2.8 3,488,445 + panE LU632_RS18455 0.75 -1.5 3,488,533 - panE LU632_RS18455 0.84 -1.8 3,488,533 - panE LU632_RS18455 0.84 +0.5 3,488,534 + panE LU632_RS18455 0.84 -0.8 3,488,534 + panE LU632_RS18455 0.84 -1.0 3,488,535 - panE LU632_RS18455 0.84 -1.4 3,488,544 + panE LU632_RS18455 0.85 -1.3 3,488,612 + -1.0 3,488,708 + yajL LU632_RS18460 0.12 +1.6 3,488,708 + yajL LU632_RS18460 0.12 -1.8 3,489,003 + yajL LU632_RS18460 0.62 -1.1 3,489,006 + yajL LU632_RS18460 0.62 +4.5 3,489,006 + yajL LU632_RS18460 0.62 +0.6 3,489,006 + yajL LU632_RS18460 0.62 -2.3 3,489,006 + yajL LU632_RS18460 0.62 -0.7 3,489,036 + yajL LU632_RS18460 0.67 -0.5 3,489,141 + yajL LU632_RS18460 0.85 -2.7 3,489,141 + yajL LU632_RS18460 0.85 +2.8 3,489,142 - yajL LU632_RS18460 0.85 +0.4 3,489,142 - yajL LU632_RS18460 0.85 +0.0 3,489,142 - yajL LU632_RS18460 0.85 -0.1 3,489,159 + yajL LU632_RS18460 0.88 +0.5 3,489,226 + +1.5 3,489,227 - -0.5 3,489,273 - +0.5 3,490,672 + -2.3 3,490,702 - -0.1 3,490,858 - +0.4 3,490,858 - -2.7 3,490,858 - -1.5 3,490,908 + LU632_RS18470 0.14 +0.8 3,490,935 + LU632_RS18470 0.17 +1.7 3,491,058 - LU632_RS18470 0.28 -1.0 3,491,190 + LU632_RS18470 0.39 +1.1 3,491,190 + LU632_RS18470 0.39 -2.3 3,491,190 + LU632_RS18470 0.39 +0.5 3,491,190 + LU632_RS18470 0.39 -1.1 3,491,190 + LU632_RS18470 0.39 +2.8 3,491,191 - LU632_RS18470 0.39 +0.9 3,491,343 - LU632_RS18470 0.53 -0.4 3,491,343 - LU632_RS18470 0.53 -1.0 3,491,374 + LU632_RS18470 0.56 +2.8
Or see this region's nucleotide sequence