Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS18005

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
3,399,904	+		LU632_RS18000	0.16	+1.2
3,399,905	-		LU632_RS18000	0.16	-0.3
3,399,905	-		LU632_RS18000	0.16	-0.2
3,399,966	-		LU632_RS18000	0.24	-0.8
3,400,100	+		LU632_RS18000	0.40	+1.3
3,400,101	-		LU632_RS18000	0.40	-2.5
3,400,103	+		LU632_RS18000	0.40	-1.5
3,400,104	-		LU632_RS18000	0.40	+0.3
3,400,110	-		LU632_RS18000	0.41	+0.5
3,400,161	-		LU632_RS18000	0.47	-0.5
3,400,256	+		LU632_RS18000	0.58	+1.0
3,400,445	+		LU632_RS18000	0.81	-0.1
3,400,445	+		LU632_RS18000	0.81	+0.2
3,400,445	+		LU632_RS18000	0.81	-1.3
3,400,445	+		LU632_RS18000	0.81	+0.1
3,400,446	-		LU632_RS18000	0.81	+1.3
3,400,446	-		LU632_RS18000	0.81	-0.3
3,400,450	+		LU632_RS18000	0.81	-1.1
3,400,481	+		LU632_RS18000	0.85	-0.5
3,400,482	-		LU632_RS18000	0.85	-0.1
3,400,537	+				+0.9
3,400,568	+				-0.3
3,400,568	+				-2.5
3,400,568	+				-1.0
3,400,568	+				+0.6
3,400,568	+				+0.1
3,400,568	+				-1.9
3,400,568	+				+1.0
3,400,569	-				-2.0
3,400,577	+				+0.1
3,400,577	+				+0.0
3,400,596	-				-0.4
3,400,626	-				-0.5
3,400,639	-				+1.5
3,400,639	-				+1.2
3,400,717	-				-1.1
3,400,749	-				+2.8
3,400,749	-				-0.2
3,400,776	+				-1.4
3,400,839	+				+0.7
3,400,841	+				+0.0
3,400,847	+				+2.6
3,401,151	+		LU632_RS18005	0.22	-0.7
3,401,279	+		LU632_RS18005	0.32	-1.1
3,401,506	-		LU632_RS18005	0.49	+0.5
3,401,584	+		LU632_RS18005	0.55	-2.5
3,401,630	+		LU632_RS18005	0.59	-0.1
3,401,631	-		LU632_RS18005	0.59	-1.5
3,401,733	-		LU632_RS18005	0.67	+0.5
3,401,740	+		LU632_RS18005	0.67	+0.8
3,401,741	-		LU632_RS18005	0.68	-3.2
3,401,813	-		LU632_RS18005	0.73	+0.4
3,401,883	-		LU632_RS18005	0.79	-1.6
3,401,897	-		LU632_RS18005	0.80	-0.5
3,401,947	+		LU632_RS18005	0.84	+1.8
3,402,045	+				-0.0
3,402,069	-				-1.8
3,402,233	+				+0.0
3,402,233	+				+1.1
3,402,234	-				-0.5
3,402,322	+				-0.0
3,402,445	+				+0.0
3,402,445	+				+0.2
3,402,446	-				-0.3
3,402,446	-				+2.6
3,402,449	+				+0.5
3,402,449	+				+3.0
3,402,449	+				-1.1
3,402,465	+				+0.7
3,402,465	+				+0.8
3,402,468	+				-0.7
3,402,529	+				-2.5
3,402,530	-				-1.9
3,402,599	+				-0.1
3,402,650	-		LU632_RS18010	0.12	-1.2
3,402,650	-		LU632_RS18010	0.12	+2.0
3,402,710	+		LU632_RS18010	0.16	-2.9
3,402,711	-		LU632_RS18010	0.16	+0.7
3,402,711	-		LU632_RS18010	0.16	+1.6
3,402,711	-		LU632_RS18010	0.16	+1.8
3,402,731	+		LU632_RS18010	0.17	-0.5
3,402,828	-		LU632_RS18010	0.23	-0.5
3,402,865	+		LU632_RS18010	0.25	-1.0
3,402,873	-		LU632_RS18010	0.26	+1.0
3,403,001	+		LU632_RS18010	0.34	-1.4
3,403,017	-		LU632_RS18010	0.35	-2.9
3,403,017	-		LU632_RS18010	0.35	-0.5
3,403,017	-		LU632_RS18010	0.35	+2.2
3,403,018	+		LU632_RS18010	0.35	-2.5
3,403,035	+		LU632_RS18010	0.36	+0.8
3,403,062	+		LU632_RS18010	0.38	+2.8
3,403,067	-		LU632_RS18010	0.38	-0.1
3,403,114	+		LU632_RS18010	0.41	-1.1
3,403,114	+		LU632_RS18010	0.41	+1.5
3,403,114	+		LU632_RS18010	0.41	-1.1
3,403,115	-		LU632_RS18010	0.41	-1.5
3,403,115	-		LU632_RS18010	0.41	-0.2
3,403,129	-		LU632_RS18010	0.42	+2.3
3,403,129	-		LU632_RS18010	0.42	+0.9