Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17865

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
3,370,147	-				+2.4
3,370,147	-				+0.1
3,370,217	+				+2.8
3,370,218	-				-0.2
3,370,351	-	sseB	LU632_RS17860	0.14	+1.3
3,370,351	-	sseB	LU632_RS17860	0.14	-1.2
3,370,382	+	sseB	LU632_RS17860	0.18	+0.6
3,370,488	-	sseB	LU632_RS17860	0.32	+0.6
3,370,499	+	sseB	LU632_RS17860	0.33	-1.7
3,370,520	+	sseB	LU632_RS17860	0.36	+0.1
3,370,522	+	sseB	LU632_RS17860	0.36	-1.7
3,370,523	-	sseB	LU632_RS17860	0.36	-0.3
3,370,541	+	sseB	LU632_RS17860	0.39	-1.2
3,370,541	+	sseB	LU632_RS17860	0.39	-0.2
3,370,673	+	sseB	LU632_RS17860	0.56	+0.5
3,370,855	-	sseB	LU632_RS17860	0.79	-0.6
3,371,006	+				-0.5
3,371,049	+				-0.0
3,371,049	+				+1.6
3,371,106	+				-1.2
3,371,107	-				-1.4
3,371,170	-				+0.5
3,371,265	+	pepB	LU632_RS17865	0.13	-0.2
3,371,265	+	pepB	LU632_RS17865	0.13	+0.0
3,371,304	+	pepB	LU632_RS17865	0.17	-1.2
3,371,381	-	pepB	LU632_RS17865	0.23	+0.4
3,371,427	-	pepB	LU632_RS17865	0.26	-1.6
3,371,626	-	pepB	LU632_RS17865	0.42	+0.0
3,371,626	-	pepB	LU632_RS17865	0.42	+0.1
3,371,645	+	pepB	LU632_RS17865	0.43	+3.3
3,371,742	+	pepB	LU632_RS17865	0.51	+0.3
3,371,758	-	pepB	LU632_RS17865	0.52	-0.1
3,371,763	+	pepB	LU632_RS17865	0.52	-1.6
3,371,764	-	pepB	LU632_RS17865	0.52	+0.8
3,371,764	-	pepB	LU632_RS17865	0.52	-1.4
3,371,764	-	pepB	LU632_RS17865	0.52	-3.4
3,371,785	-	pepB	LU632_RS17865	0.54	+0.2
3,371,787	+	pepB	LU632_RS17865	0.54	-0.2
3,371,787	+	pepB	LU632_RS17865	0.54	-0.3
3,371,788	-	pepB	LU632_RS17865	0.54	+1.4
3,371,906	+	pepB	LU632_RS17865	0.63	-0.2
3,371,907	-	pepB	LU632_RS17865	0.63	-0.6
3,371,907	-	pepB	LU632_RS17865	0.63	+0.6
3,371,907	-	pepB	LU632_RS17865	0.63	+0.5
3,371,945	+	pepB	LU632_RS17865	0.66	+1.2
3,371,946	-	pepB	LU632_RS17865	0.67	+0.0
3,372,054	+	pepB	LU632_RS17865	0.75	+1.0
3,372,057	+	pepB	LU632_RS17865	0.75	+1.3
3,372,201	+	pepB	LU632_RS17865	0.86	+0.1
3,372,268	-				+2.3
3,372,399	+				+1.2
3,372,442	+				+0.8
3,372,443	-				-0.6
3,372,515	+				-2.2
3,372,515	+				-1.3
3,372,537	+				-1.2
3,372,537	+				+1.1
3,372,537	+				+2.4
3,372,538	-				+1.8
3,372,538	-				-0.6