Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS17180

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
3,231,555	-		LU632_RS17170	0.75	+1.0
3,231,652	-		LU632_RS17170	0.80	+0.2
3,231,652	-		LU632_RS17170	0.80	+1.7
3,231,795	-		LU632_RS17170	0.89	+0.5
3,231,798	+		LU632_RS17170	0.89	+1.6
3,231,798	+		LU632_RS17170	0.89	-1.9
3,231,799	-		LU632_RS17170	0.89	+1.0
3,231,936	+				-1.2
3,232,055	+		LU632_RS17175	0.33	+0.4
3,232,056	-		LU632_RS17175	0.34	-2.9
3,232,100	+		LU632_RS17175	0.50	-0.9
3,232,220	+				+0.8
3,232,220	+				-0.3
3,232,220	+				+1.2
3,232,221	-				-1.2
3,232,221	-				+0.9
3,232,222	+				-2.7
3,232,222	+				+0.7
3,232,223	-				-1.2
3,232,223	-				+1.0
3,232,223	-				+1.0
3,232,229	-				+0.2
3,232,229	-				-0.4
3,232,229	-				+0.7
3,232,229	-				-0.3
3,232,441	-		LU632_RS17180	0.10	-3.0
3,232,587	+		LU632_RS17180	0.18	-1.2
3,232,588	-		LU632_RS17180	0.18	+2.1
3,232,588	-		LU632_RS17180	0.18	-0.1
3,232,660	+		LU632_RS17180	0.21	+0.8
3,232,707	-		LU632_RS17180	0.24	+2.2
3,232,787	-		LU632_RS17180	0.28	+0.2
3,232,806	+		LU632_RS17180	0.29	-2.4
3,232,982	-		LU632_RS17180	0.38	+0.8
3,233,045	+		LU632_RS17180	0.41	-2.0
3,233,045	+		LU632_RS17180	0.41	+0.9
3,233,119	+		LU632_RS17180	0.45	-2.6
3,233,371	-		LU632_RS17180	0.57	-2.4
3,233,373	+		LU632_RS17180	0.57	-0.2
3,233,373	+		LU632_RS17180	0.57	+0.6
3,233,374	-		LU632_RS17180	0.57	+0.2
3,233,374	-		LU632_RS17180	0.57	+0.7
3,233,463	+		LU632_RS17180	0.62	-0.9
3,233,539	+		LU632_RS17180	0.66	+1.1
3,233,540	-		LU632_RS17180	0.66	+1.1
3,233,678	+		LU632_RS17180	0.73	-1.4
3,233,679	-		LU632_RS17180	0.73	-0.4
3,233,692	+		LU632_RS17180	0.74	+1.1
3,233,692	+		LU632_RS17180	0.74	+0.4
3,233,807	-		LU632_RS17180	0.79	-1.2
3,233,825	-		LU632_RS17180	0.80	-0.5
3,233,854	+		LU632_RS17180	0.82	+1.7
3,233,859	+		LU632_RS17180	0.82	+0.6
3,233,859	+		LU632_RS17180	0.82	-2.4
3,233,860	-		LU632_RS17180	0.82	-1.3
3,233,860	-		LU632_RS17180	0.82	+0.7
3,233,900	-		LU632_RS17180	0.84	+1.1
3,233,900	-		LU632_RS17180	0.84	+1.8
3,234,094	+				+1.0
3,234,094	+				-1.6
3,234,143	-				+0.4
3,234,166	+				-0.4
3,234,212	+				+2.1
3,234,213	-				-0.1
3,234,340	+		LU632_RS17185	0.29	-1.0
3,234,341	-		LU632_RS17185	0.29	-1.3
3,234,360	+		LU632_RS17185	0.32	+0.4
3,234,361	-		LU632_RS17185	0.32	-0.9
3,234,361	-		LU632_RS17185	0.32	+0.4
3,234,431	-		LU632_RS17185	0.44	+0.4
3,234,560	+		LU632_RS17185	0.65	-2.6
3,234,561	-		LU632_RS17185	0.65	+0.1
3,234,597	-		LU632_RS17185	0.71	+0.1
3,234,887	+				+0.1
3,234,888	-				-1.2
3,234,890	-				+0.8
3,234,953	+				-0.1
3,234,953	+				+0.0
3,234,953	+				-0.2
3,234,954	-				+0.2
3,234,954	-				-0.7
3,234,956	-				-1.5
3,234,974	+				+0.0
3,234,975	-				-2.2