Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16980

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
3,200,901	-	ung	LU632_RS16970	0.71	+0.2
3,200,944	-	ung	LU632_RS16970	0.77	+0.2
3,200,962	+	ung	LU632_RS16970	0.80	-0.2
3,201,040	-				+2.1
3,201,098	-				+2.8
3,201,869	-				-3.0
3,201,876	+				-1.6
3,202,776	+				-0.4
3,202,776	+				+1.9
3,202,882	+				-1.2
3,203,017	+				+1.1
3,203,017	+				-3.0
3,203,104	+	recN	LU632_RS16985	0.15	+1.6
3,203,114	-	recN	LU632_RS16985	0.15	+0.5
3,203,152	+	recN	LU632_RS16985	0.18	+1.6
3,203,153	-	recN	LU632_RS16985	0.18	+0.6
3,203,193	+	recN	LU632_RS16985	0.20	-0.7
3,203,230	+	recN	LU632_RS16985	0.22	-2.5
3,203,230	+	recN	LU632_RS16985	0.22	-1.7
3,203,270	-	recN	LU632_RS16985	0.25	-1.1
3,203,325	+	recN	LU632_RS16985	0.28	-2.4
3,203,341	+	recN	LU632_RS16985	0.29	+0.5
3,203,342	-	recN	LU632_RS16985	0.29	-1.1
3,203,424	+	recN	LU632_RS16985	0.34	+1.3
3,203,427	+	recN	LU632_RS16985	0.34	+2.2
3,203,498	+	recN	LU632_RS16985	0.38	+0.8
3,203,500	+	recN	LU632_RS16985	0.39	-1.9
3,203,501	-	recN	LU632_RS16985	0.39	-0.6
3,203,642	-	recN	LU632_RS16985	0.47	+0.7
3,203,710	-	recN	LU632_RS16985	0.51	-0.4