Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16810

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
3,163,835	+				+0.9
3,163,904	-				+1.1
3,163,906	+				-0.6
3,163,907	-				+0.2
3,163,981	+				+1.2
3,164,003	-				+0.9
3,164,019	-				+1.1
3,164,022	-				+2.0
3,164,167	+	nrdH	LU632_RS16800	0.65	-0.5
3,164,172	-	nrdH	LU632_RS16800	0.67	-0.8
3,164,267	+				+2.3
3,164,375	+	nrdI	LU632_RS16805	0.28	-0.6
3,164,376	-	nrdI	LU632_RS16805	0.28	-0.3
3,164,378	-	nrdI	LU632_RS16805	0.29	+0.5
3,164,396	+	nrdI	LU632_RS16805	0.33	+0.2
3,164,397	-	nrdI	LU632_RS16805	0.33	+0.5
3,164,472	+	nrdI	LU632_RS16805	0.51	-0.7
3,164,526	+	nrdI	LU632_RS16805	0.64	+0.6
3,164,526	+	nrdI	LU632_RS16805	0.64	-0.6
3,164,584	-	nrdI	LU632_RS16805	0.78	-1.2
3,164,613	+	nrdI	LU632_RS16805	0.85	-0.4
3,164,613	+	nrdI	LU632_RS16805	0.85	+0.9
3,164,613	+	nrdI	LU632_RS16805	0.85	+0.1
3,164,614	-	nrdI	LU632_RS16805	0.85	+0.8
3,164,614	-	nrdI	LU632_RS16805	0.85	-2.3
3,164,614	-	nrdI	LU632_RS16805	0.85	+0.7
3,164,771	-				+0.3
3,164,771	-				+1.7
3,164,778	-				+0.4
3,164,786	+				+0.5
3,164,787	-				-1.5
3,164,787	-				-0.3
3,164,787	-				+0.8
3,164,855	-				+0.3
3,164,871	+				+0.1
3,164,872	-				-0.6
3,164,965	+	nrdE	LU632_RS16810	0.13	+0.4
3,164,968	-	nrdE	LU632_RS16810	0.13	-0.6
3,164,975	-	nrdE	LU632_RS16810	0.13	-0.7
3,165,004	+	nrdE	LU632_RS16810	0.14	+0.4
3,165,303	+	nrdE	LU632_RS16810	0.29	-0.8
3,165,304	-	nrdE	LU632_RS16810	0.29	+0.3
3,165,383	+	nrdE	LU632_RS16810	0.33	-1.4
3,165,490	-	nrdE	LU632_RS16810	0.38	-1.2
3,165,490	-	nrdE	LU632_RS16810	0.38	+1.7
3,165,592	+	nrdE	LU632_RS16810	0.43	+1.6
3,165,593	-	nrdE	LU632_RS16810	0.43	+0.9
3,165,593	-	nrdE	LU632_RS16810	0.43	-1.7
3,165,632	+	nrdE	LU632_RS16810	0.45	+0.7
3,165,642	-	nrdE	LU632_RS16810	0.45	+0.7
3,165,642	-	nrdE	LU632_RS16810	0.45	+0.4
3,165,673	-	nrdE	LU632_RS16810	0.47	+0.7
3,165,733	+	nrdE	LU632_RS16810	0.49	+0.7
3,165,734	-	nrdE	LU632_RS16810	0.49	-0.8
3,165,735	+	nrdE	LU632_RS16810	0.50	+0.9
3,165,825	+	nrdE	LU632_RS16810	0.54	+0.8
3,165,826	-	nrdE	LU632_RS16810	0.54	+0.2
3,165,838	+	nrdE	LU632_RS16810	0.54	-1.6
3,165,838	+	nrdE	LU632_RS16810	0.54	+0.2
3,165,870	+	nrdE	LU632_RS16810	0.56	+1.7
3,165,944	+	nrdE	LU632_RS16810	0.60	+2.0
3,166,129	+	nrdE	LU632_RS16810	0.68	-1.5
3,166,129	+	nrdE	LU632_RS16810	0.68	-0.3
3,166,130	-	nrdE	LU632_RS16810	0.68	+0.4
3,166,130	-	nrdE	LU632_RS16810	0.68	-1.9
3,166,130	-	nrdE	LU632_RS16810	0.68	-0.6
3,166,135	+	nrdE	LU632_RS16810	0.69	+0.3
3,166,136	-	nrdE	LU632_RS16810	0.69	+1.4
3,166,136	-	nrdE	LU632_RS16810	0.69	+0.1
3,166,136	-	nrdE	LU632_RS16810	0.69	+0.2
3,166,148	-	nrdE	LU632_RS16810	0.69	+1.1
3,166,148	-	nrdE	LU632_RS16810	0.69	-0.7
3,166,150	+	nrdE	LU632_RS16810	0.69	+0.2
3,166,249	+	nrdE	LU632_RS16810	0.74	+0.4
3,166,249	+	nrdE	LU632_RS16810	0.74	+0.4
3,166,250	-	nrdE	LU632_RS16810	0.74	-0.3
3,166,314	-	nrdE	LU632_RS16810	0.77	-1.3
3,166,347	-	nrdE	LU632_RS16810	0.79	+0.6
3,166,375	+	nrdE	LU632_RS16810	0.80	+2.7
3,166,421	-	nrdE	LU632_RS16810	0.82	-0.2
3,166,434	+	nrdE	LU632_RS16810	0.83	+2.6
3,166,435	-	nrdE	LU632_RS16810	0.83	+0.4
3,166,501	+	nrdE	LU632_RS16810	0.86	+3.2
3,166,502	-	nrdE	LU632_RS16810	0.86	-3.4
3,166,519	-	nrdE	LU632_RS16810	0.87	+1.9
3,166,578	+				-0.3
3,166,584	+				+0.5
3,166,585	-				+2.4
3,166,585	-				+0.8
3,166,588	+				-1.6
3,166,588	+				-0.2
3,166,588	+				-1.2
3,166,589	-				+0.0
3,166,669	-				-1.8
3,166,671	+				-2.7
3,166,672	-				-0.5
3,166,684	+				+0.8
3,166,684	+				+0.4
3,166,684	+				-0.0
3,166,715	-				-0.5
3,166,717	+				+1.8
3,166,717	+				+3.3
3,166,717	+				-1.6
3,166,718	-				+1.2
3,166,718	-				+1.4
3,166,750	-				-0.5
3,166,750	-				+0.4
3,166,783	+				+0.6
3,166,844	+				-0.3
3,166,845	-				-1.9
3,167,099	+	nrdF	LU632_RS16815	0.28	+0.9
3,167,108	+	nrdF	LU632_RS16815	0.29	-3.4
3,167,117	+	nrdF	LU632_RS16815	0.30	+0.0
3,167,143	-	nrdF	LU632_RS16815	0.33	+0.6
3,167,193	+	nrdF	LU632_RS16815	0.38	-2.5
3,167,193	+	nrdF	LU632_RS16815	0.38	+0.2
3,167,193	+	nrdF	LU632_RS16815	0.38	-3.8
3,167,193	+	nrdF	LU632_RS16815	0.38	+3.2
3,167,194	-	nrdF	LU632_RS16815	0.38	-0.1
3,167,229	-	nrdF	LU632_RS16815	0.42	-0.9
3,167,229	-	nrdF	LU632_RS16815	0.42	-1.0
3,167,229	-	nrdF	LU632_RS16815	0.42	+0.1
3,167,229	-	nrdF	LU632_RS16815	0.42	+0.6
3,167,254	-	nrdF	LU632_RS16815	0.44	-0.7
3,167,257	-	nrdF	LU632_RS16815	0.44	+2.5
3,167,317	-	nrdF	LU632_RS16815	0.51	+0.2
3,167,328	+	nrdF	LU632_RS16815	0.52	+0.3
3,167,410	+	nrdF	LU632_RS16815	0.60	-0.8
3,167,418	+	nrdF	LU632_RS16815	0.61	+1.6
3,167,421	+	nrdF	LU632_RS16815	0.62	-2.3
3,167,421	+	nrdF	LU632_RS16815	0.62	-0.7
3,167,422	-	nrdF	LU632_RS16815	0.62	-0.6
3,167,422	-	nrdF	LU632_RS16815	0.62	-0.0
3,167,431	-	nrdF	LU632_RS16815	0.63	+1.4
3,167,433	-	nrdF	LU632_RS16815	0.63	-0.6
3,167,504	-	nrdF	LU632_RS16815	0.70	+1.7
3,167,513	-	nrdF	LU632_RS16815	0.71	-1.0
3,167,515	+	nrdF	LU632_RS16815	0.71	+2.0
3,167,515	+	nrdF	LU632_RS16815	0.71	+0.1
3,167,516	-	nrdF	LU632_RS16815	0.71	-0.9
3,167,516	-	nrdF	LU632_RS16815	0.71	-0.4
3,167,516	-	nrdF	LU632_RS16815	0.71	-0.1
3,167,516	-	nrdF	LU632_RS16815	0.71	-0.2
3,167,551	-	nrdF	LU632_RS16815	0.75	+2.3
3,167,597	+	nrdF	LU632_RS16815	0.80	-0.8
3,167,598	-	nrdF	LU632_RS16815	0.80	-1.9
3,167,598	-	nrdF	LU632_RS16815	0.80	-0.7
3,167,598	-	nrdF	LU632_RS16815	0.80	+1.6
3,167,606	+	nrdF	LU632_RS16815	0.81	-0.2
3,167,653	+	nrdF	LU632_RS16815	0.86	-0.0
3,167,759	-				-2.2