Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16515

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
3,128,710	-		LU632_RS16510	0.72	+0.3
3,128,790	-				-0.4
3,128,952	+				+0.3
3,129,150	-				-0.5
3,129,188	+				+1.2
3,129,189	-				-1.0
3,129,189	-				+0.2
3,129,189	-				+0.3
3,129,189	-				+1.9
3,129,281	+				+0.5
3,129,434	-				+1.9
3,129,438	+				+0.3
3,129,439	-				+0.3
3,129,439	-				+1.0
3,129,439	-				-3.9
3,129,442	+				-0.3
3,129,442	+				-2.7
3,129,443	-				+1.3
3,129,443	-				-3.5
3,129,537	+				-1.3
3,129,538	-				+0.3
3,129,562	+				+0.8
3,129,562	+				+0.0
3,129,567	+				-2.7
3,129,568	-				-3.8
3,129,572	-				-0.2
3,129,595	+				+0.0
3,129,615	-				+0.1
3,130,991	-				+1.0
3,131,036	+				-2.7
3,131,037	-				-0.7
3,131,085	-				+0.2
3,131,105	+				+1.4
3,131,105	+				+2.8
3,131,105	+				+1.6
3,131,106	-				-1.1
3,131,107	+				-0.1
3,131,107	+				+0.4
3,131,107	+				+0.2
3,131,107	+				+2.5
3,131,108	-				+0.2
3,131,126	-				-0.2
3,131,126	-				-1.1
3,131,166	+		LU632_RS16520	0.15	-3.4
3,131,207	-		LU632_RS16520	0.26	+2.3
3,131,306	+		LU632_RS16520	0.53	+3.9
3,131,306	+		LU632_RS16520	0.53	+0.3
3,131,306	+		LU632_RS16520	0.53	+0.5
3,131,307	-		LU632_RS16520	0.53	+0.9
3,131,438	-		LU632_RS16520	0.88	+0.9
3,131,478	+				+0.2
3,131,480	+				-0.1
3,131,481	-				+2.3
3,131,499	+				-1.1
3,131,499	+				-2.1
3,131,499	+				-2.7
3,131,500	-				+1.8
3,131,569	+				-1.7
3,131,569	+				+0.3
3,131,570	-				-1.0
3,131,570	-				-2.6
3,131,570	-				-0.5
3,131,572	-				-0.1
3,131,603	-				-0.3
3,131,613	+				-1.7
3,131,613	+				-0.2
3,131,613	+				+2.0
3,131,613	+				+1.0
3,131,614	-				+0.7
3,131,614	-				+0.0
3,131,614	-				-1.3
3,131,759	+		LU632_RS16525	0.13	+0.3
3,131,760	-		LU632_RS16525	0.13	+1.4
3,131,760	-		LU632_RS16525	0.13	-0.1
3,131,761	+		LU632_RS16525	0.13	+0.8
3,131,865	-		LU632_RS16525	0.22	+1.5