Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS16310

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
3,084,602	+	miaB	LU632_RS16305	0.45	+1.4
3,084,602	+	miaB	LU632_RS16305	0.45	-0.3
3,084,603	-	miaB	LU632_RS16305	0.45	+1.3
3,084,817	-	miaB	LU632_RS16305	0.60	-1.6
3,084,817	-	miaB	LU632_RS16305	0.60	+0.3
3,084,817	-	miaB	LU632_RS16305	0.60	-0.9
3,084,832	-	miaB	LU632_RS16305	0.61	+1.3
3,084,836	+	miaB	LU632_RS16305	0.62	+0.1
3,084,836	+	miaB	LU632_RS16305	0.62	-0.2
3,084,837	-	miaB	LU632_RS16305	0.62	+0.7
3,084,837	-	miaB	LU632_RS16305	0.62	+0.8
3,084,856	-	miaB	LU632_RS16305	0.63	-2.0
3,084,877	-	miaB	LU632_RS16305	0.64	-0.5
3,084,958	+	miaB	LU632_RS16305	0.70	-2.2
3,084,958	+	miaB	LU632_RS16305	0.70	-0.2
3,084,961	-	miaB	LU632_RS16305	0.70	-0.6
3,084,961	-	miaB	LU632_RS16305	0.70	-0.9
3,084,961	-	miaB	LU632_RS16305	0.70	+0.8
3,084,966	+	miaB	LU632_RS16305	0.71	+0.3
3,084,970	+	miaB	LU632_RS16305	0.71	-1.7
3,084,970	+	miaB	LU632_RS16305	0.71	-0.2
3,084,971	-	miaB	LU632_RS16305	0.71	-1.2
3,085,131	+	miaB	LU632_RS16305	0.82	-0.5
3,085,131	+	miaB	LU632_RS16305	0.82	-2.5
3,085,249	+				-2.7
3,085,249	+				+0.7
3,085,250	-				-1.2
3,085,251	+				-1.2
3,085,252	-				-1.2
3,085,282	-				+0.9
3,085,446	+				-0.2
3,085,446	+				+1.0
3,085,465	+				+0.6
3,085,466	+				-0.8
3,085,501	+				-1.3
3,085,591	+				+2.4
3,085,624	-				-2.0
3,085,676	-				-3.9
3,085,678	+				+0.1
3,085,735	+		LU632_RS16310	0.13	+1.8
3,085,736	-		LU632_RS16310	0.13	-0.7
3,085,759	+		LU632_RS16310	0.15	+1.9
3,085,793	+		LU632_RS16310	0.19	+0.4
3,085,831	+		LU632_RS16310	0.22	+1.7
3,085,921	-		LU632_RS16310	0.31	+4.5
3,085,924	+		LU632_RS16310	0.31	+0.3
3,085,976	+		LU632_RS16310	0.36	-1.7
3,085,977	-		LU632_RS16310	0.36	+1.0
3,085,977	-		LU632_RS16310	0.36	-2.8
3,085,977	-		LU632_RS16310	0.36	+0.3
3,085,977	-		LU632_RS16310	0.36	+2.6
3,085,977	-		LU632_RS16310	0.36	+1.8
3,085,987	+		LU632_RS16310	0.37	+2.0
3,086,100	+		LU632_RS16310	0.47	-2.5
3,086,101	-		LU632_RS16310	0.48	-1.6
3,086,193	-		LU632_RS16310	0.56	-1.3
3,086,193	-		LU632_RS16310	0.56	-0.0
3,086,276	+		LU632_RS16310	0.64	-1.2
3,086,276	+		LU632_RS16310	0.64	+0.2
3,086,277	-		LU632_RS16310	0.64	-0.2
3,086,279	-		LU632_RS16310	0.64	+0.2
3,086,279	-		LU632_RS16310	0.64	-0.1
3,086,628	+				-0.7
3,086,638	+				+1.3
3,087,183	+				-0.8
3,087,187	+				-3.4
3,087,187	+				+2.1
3,087,329	+	corC	LU632_RS16320	0.13	-2.0
3,087,335	+	corC	LU632_RS16320	0.13	+1.3
3,087,561	+	corC	LU632_RS16320	0.39	-0.2
3,087,581	+	corC	LU632_RS16320	0.41	+1.5
3,087,581	+	corC	LU632_RS16320	0.41	-0.3
3,087,615	+	corC	LU632_RS16320	0.45	+1.5
3,087,615	+	corC	LU632_RS16320	0.45	+1.2