Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15135

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
2,867,718	+		LU632_RS15125	0.28	+0.8
2,867,719	-		LU632_RS15125	0.28	-0.0
2,867,719	-		LU632_RS15125	0.28	+0.8
2,867,816	+		LU632_RS15125	0.46	-0.5
2,867,836	+		LU632_RS15125	0.50	-1.3
2,867,836	+		LU632_RS15125	0.50	-1.1
2,867,837	-		LU632_RS15125	0.50	-0.7
2,867,855	-		LU632_RS15125	0.53	+0.0
2,867,858	-		LU632_RS15125	0.54	-1.6
2,867,933	+		LU632_RS15125	0.67	+0.3
2,867,933	+		LU632_RS15125	0.67	+0.9
2,867,934	-		LU632_RS15125	0.67	+1.1
2,867,934	-		LU632_RS15125	0.67	-1.1
2,868,110	+				+0.3
2,868,110	+				-1.7
2,868,111	-				-3.9
2,868,181	+				+0.1
2,868,181	+				-2.2
2,868,197	+				+2.5
2,868,369	+		LU632_RS15130	0.55	-0.1
2,868,397	+		LU632_RS15130	0.63	-1.7
2,868,398	-		LU632_RS15130	0.63	+0.1
2,868,398	-		LU632_RS15130	0.63	+0.8
2,868,402	-		LU632_RS15130	0.64	+1.1
2,868,590	+				+2.3
2,868,591	-				+0.6
2,868,591	-				+1.3
2,868,591	-				+3.1
2,868,645	+				-1.7
2,868,873	-		LU632_RS15135	0.33	+0.9
2,868,905	-		LU632_RS15135	0.38	-0.9
2,869,140	-		LU632_RS15135	0.68	+2.3
2,869,223	+		LU632_RS15135	0.79	-2.9
2,869,224	-		LU632_RS15135	0.79	-2.3
2,869,224	-		LU632_RS15135	0.79	+0.3
2,869,264	+		LU632_RS15135	0.84	+3.8
2,869,343	-				+1.7
2,869,396	-				+1.3
2,869,441	-		LU632_RS15140	0.11	-0.9
2,869,462	+		LU632_RS15140	0.18	-0.3
2,869,462	+		LU632_RS15140	0.18	+0.8
2,869,462	+		LU632_RS15140	0.18	+1.4
2,869,463	-		LU632_RS15140	0.18	+2.2
2,869,474	-		LU632_RS15140	0.22	+0.8
2,869,515	+		LU632_RS15140	0.36	-1.6
2,869,545	-		LU632_RS15140	0.47	+0.1
2,869,545	-		LU632_RS15140	0.47	+0.2
2,869,545	-		LU632_RS15140	0.47	+0.2
2,869,598	+		LU632_RS15140	0.66	-0.2
2,869,599	-		LU632_RS15140	0.66	+1.0
2,869,621	+		LU632_RS15140	0.74	+1.0
2,869,622	-		LU632_RS15140	0.74	-0.2
2,869,645	+		LU632_RS15140	0.82	+0.0
2,869,702	+				-1.7
2,869,706	+				-1.7
2,869,706	+				-1.2
2,869,706	+				+0.7
2,869,706	+				+1.8
2,869,707	-				+0.5
2,869,708	+				+1.3
2,869,709	-				-4.1
2,869,802	-		LU632_RS15145	0.10	-1.7
2,869,835	-		LU632_RS15145	0.17	+0.2
2,869,835	-		LU632_RS15145	0.17	+0.5
2,869,894	+		LU632_RS15145	0.29	-1.4
2,869,894	+		LU632_RS15145	0.29	+2.6
2,869,895	-		LU632_RS15145	0.30	+2.3
2,869,895	-		LU632_RS15145	0.30	+0.2
2,869,895	-		LU632_RS15145	0.30	-2.5
2,869,975	+		LU632_RS15145	0.46	+0.5
2,869,976	-		LU632_RS15145	0.46	+0.9
2,869,976	-		LU632_RS15145	0.46	-3.4
2,869,976	-		LU632_RS15145	0.46	+0.9
2,869,976	-		LU632_RS15145	0.46	+0.8
2,870,015	-		LU632_RS15145	0.54	+2.6
2,870,079	-		LU632_RS15145	0.67	+0.5
2,870,079	-		LU632_RS15145	0.67	+0.7
2,870,200	+				-1.7
2,870,201	-				-0.6
2,870,201	-				-0.6
2,870,234	+				-1.0
2,870,235	-				-0.2
2,870,264	-				+1.0
2,870,318	+				-1.3
2,870,370	+				+0.8
2,870,370	+				-1.0
2,870,371	-				-0.2
2,870,371	-				+3.0