Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS15080

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
2,859,324	-				-2.1
2,859,394	+				-3.3
2,859,416	+		LU632_RS15075	0.15	-0.1
2,859,533	+		LU632_RS15075	0.47	-2.3
2,859,533	+		LU632_RS15075	0.47	+1.7
2,859,534	-		LU632_RS15075	0.47	-0.1
2,859,534	-		LU632_RS15075	0.47	+0.9
2,859,535	+		LU632_RS15075	0.47	+1.0
2,859,535	+		LU632_RS15075	0.47	+0.8
2,859,535	+		LU632_RS15075	0.47	-0.0
2,859,536	-		LU632_RS15075	0.48	+0.2
2,859,541	+		LU632_RS15075	0.49	-0.8
2,859,541	+		LU632_RS15075	0.49	-0.1
2,859,541	+		LU632_RS15075	0.49	-1.5
2,859,562	+		LU632_RS15075	0.55	+1.1
2,859,604	+		LU632_RS15075	0.66	+0.5
2,859,609	+		LU632_RS15075	0.67	-0.3
2,859,640	+		LU632_RS15075	0.76	-0.8
2,859,671	+		LU632_RS15075	0.84	+0.6
2,859,672	-		LU632_RS15075	0.84	+0.3
2,859,701	-				-0.5
2,859,750	+				+1.8
2,859,750	+				-0.0
2,859,751	-				+0.2
2,859,751	-				-0.8
2,859,854	-				-0.9
2,859,862	-				+1.1
2,859,874	+				+1.1
2,859,875	-				+0.1
2,860,004	+				+0.4
2,860,101	+				+1.6
2,860,102	-				+0.0
2,860,102	-				+1.7
2,860,119	+				-1.4
2,860,164	+				-0.3
2,860,164	+				+0.6
2,860,359	-		LU632_RS15080	0.12	+0.6
2,860,399	-		LU632_RS15080	0.22	-0.3
2,860,399	-		LU632_RS15080	0.22	+1.2
2,860,479	-		LU632_RS15080	0.40	+0.2
2,860,554	-		LU632_RS15080	0.58	+0.3
2,860,719	-				-0.9
2,860,731	-				-2.6
2,860,814	-		LU632_RS15085	0.13	+1.2
2,860,875	+		LU632_RS15085	0.34	-2.1
2,860,875	+		LU632_RS15085	0.34	+0.3
2,860,981	+		LU632_RS15085	0.71	-2.3
2,860,982	-		LU632_RS15085	0.71	+1.9
2,860,982	-		LU632_RS15085	0.71	+3.5
2,860,982	-		LU632_RS15085	0.71	+0.3
2,860,983	+		LU632_RS15085	0.71	+0.8
2,861,065	+				-1.9
2,861,065	+				-2.0
2,861,066	-				+0.3
2,861,125	+				-1.7
2,861,137	-				+0.3
2,861,192	-				-0.0
2,861,223	+				-0.2
2,861,225	+				+2.4
2,861,225	+				+1.8
2,861,225	+				-0.7
2,861,225	+				+0.1
2,861,225	+				+0.9
2,861,226	-				-0.4
2,861,229	+				-0.1
2,861,230	-				+0.2
2,861,255	+				-0.2
2,861,270	-				-1.2
2,861,272	-				-2.9
2,861,272	-				-0.3
2,861,274	-				-0.6
2,861,274	-				-1.2
2,861,534	-				+0.8
2,861,647	+		LU632_RS15090	0.12	-0.0
2,861,648	-		LU632_RS15090	0.12	+0.2
2,861,673	+		LU632_RS15090	0.13	-1.0
2,861,707	-		LU632_RS15090	0.14	-0.7