Strain Fitness in Erwinia tracheiphila SCR3 around LU632_RS13085

Experiment: Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Experiment:TE2, Cucumber 6 Petiole 1 (TE2-S-C6-P1)
2,497,462	+				+0.5
2,497,462	+				-0.7
2,497,462	+				+0.6
2,497,462	+				+0.3
2,497,463	-				+1.6
2,497,463	-				+0.5
2,497,465	+				-1.5
2,497,465	+				-0.1
2,497,465	+				-1.5
2,497,466	-				-0.6
2,497,495	-				-1.5
2,497,560	+	fadR	LU632_RS13080	0.19	-0.3
2,497,602	+	fadR	LU632_RS13080	0.25	+0.8
2,497,602	+	fadR	LU632_RS13080	0.25	-0.7
2,497,603	-	fadR	LU632_RS13080	0.25	+0.9
2,497,656	+	fadR	LU632_RS13080	0.32	-1.2
2,497,697	-	fadR	LU632_RS13080	0.38	+0.1
2,497,714	+	fadR	LU632_RS13080	0.40	+1.0
2,497,717	-	fadR	LU632_RS13080	0.41	+1.8
2,497,717	-	fadR	LU632_RS13080	0.41	+0.4
2,497,816	+	fadR	LU632_RS13080	0.55	+2.8
2,497,816	+	fadR	LU632_RS13080	0.55	+0.1
2,497,817	-	fadR	LU632_RS13080	0.55	+0.6
2,497,897	+	fadR	LU632_RS13080	0.66	+2.1
2,497,985	+	fadR	LU632_RS13080	0.78	+0.1
2,497,985	+	fadR	LU632_RS13080	0.78	-0.4
2,498,095	-				-0.4
2,498,183	+				-2.1
2,498,348	+				-0.4
2,498,429	+				+0.4
2,498,429	+				+1.0
2,498,503	-	dsbB	LU632_RS13085	0.11	-3.2
2,498,574	+	dsbB	LU632_RS13085	0.25	+0.1
2,498,574	+	dsbB	LU632_RS13085	0.25	-1.9
2,498,575	-	dsbB	LU632_RS13085	0.25	-1.0
2,498,729	+	dsbB	LU632_RS13085	0.54	-1.9
2,498,746	-	dsbB	LU632_RS13085	0.57	-0.5
2,498,793	+	dsbB	LU632_RS13085	0.66	-0.7
2,498,794	-	dsbB	LU632_RS13085	0.66	-1.0
2,498,897	+	dsbB	LU632_RS13085	0.85	-1.2
2,498,902	-	dsbB	LU632_RS13085	0.86	-4.2
2,498,902	-	dsbB	LU632_RS13085	0.86	-0.4
2,499,013	+				-0.3
2,499,014	-				-0.9
2,499,034	+				-0.2
2,499,036	+				-2.6
2,499,036	+				-1.1
2,499,036	+				+0.1
2,499,052	+				-0.4
2,499,103	-				-0.1
2,499,177	-				+2.2
2,499,316	+				-0.2
2,499,316	+				-1.1
2,499,364	+				-1.6
2,499,365	-				-1.9
2,499,504	+				-0.1
2,499,547	-				+0.6
2,499,556	-				-2.7
2,499,578	-				-0.7
2,499,596	+				+0.6
2,499,596	+				-0.9
2,499,597	-				+2.1
2,499,627	-				-0.5